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[180224_at]

Description F47B7.3 /REP_DB=WormBase Gene ID /WP=CE02744 /TR=Q20510 /GB=AAA80367.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 29.5
(3)
A 		13.4
(-2.4)
A 		11.6
(-3)
A 		20
(-0.2)
A 		18
B 8.9
(-2.1)
A 		39.1
(3)
A 		3.4
(-3)
A 		22.6
(0.2)
A 		36
C 12.2
(-2.5)
A 		12
(-2.5)
A 		2.2
(-3)
A 		118.6
(3)
A 		116
avr 16.9
(-1.6) 		21.5
(-1) 		5.7
(-3) 		53.7
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 4.5
(-3)
A 		7.9
(-2.5)
A 		5.8
(-2.8)
A 		9.5
(-2.2)
A 		43.8
(3)
A 		22.8
(-0.2)
A 		39
B 48
(3)
A 		9.1
(-2)
A 		5.3
(-2.5)
A 		32.8
(1)
A 		4.8
(-2.6)
A 		1.7
(-3)
A 		46
C 6.3
(-2.4)
A 		5.4
(-3)
A 		10.6
(0.3)
A 		14.3
(2.6)
A 		12.3
(1.3)
A 		15
(3)
A 		10
avr 19.6
(2.7) 		7.5
(-2.9) 		7.2
(-3) 		18.9
(2.4) 		20.3
(3) 		13.2
(-0.3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 10.8
(3)
A 		2.9
(-3)
A 		3
(-2.9)
A 		2.9
(-3)
A 		8
B 2.8
(-1.7)
A 		9.7
(3)
A 		0.8
(-3)
A 		4.8
(-0.3)
A 		9
C 4
(-2)
A 		3.4
(-2.2)
A 		0.8
(-3)
A 		20
(3)
A 		19
avr 5.9
(0.4) 		5.3
(-0) 		1.5
(-3) 		9.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.8
(-2)
A 		1.3
(-2.8)
A 		2.4
(-2.2)
A 		13.2
(3)
A 		5.5
(-0.7)
A 		12
B 16.7
(3)
A 		3
(-2.1)
A 		1.3
(-2.7)
A 		8.7
(0)
A 		2
(-2.5)
A 		0.6
(-3)
A 		16
C 2.3
(-1.8)
A 		1.6
(-3)
A 		2.7
(-1.1)
A 		2.9
(-0.7)
A 		4
(1.2)
A 		5
(3)
A 		3
avr 6.6
(3) 		2.5
(-2.1) 		1.8
(-3) 		4.7
(0.6) 		6.4
(2.8) 		3.7
(-0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18373
Sequence Type Exemplar sequence
Representative Public ID F47B7.3 NCBI
Target Description F47B7.3 /REP_DB=WormBase Gene ID /WP=CE02744 /TR=Q20510 /GB=AAA80367.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076247 NCBI Caenorhabditis elegans F47B7.3 (F47B7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000025974 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3762662:3764379:-1 11/11 None
SNAP00000025966 ENSEMBL cdna:SNAP chromosome:CEL140:X:3763041:3764340:-1 11/11 None
F47B7.3 ENSEMBL cdna:known chromosome:CEL140:X:3763041:3764379:-1 gene:F47B7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3763041-3764380(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B7.3
Entrez Gene 185890 Entrez gene
SwissProt Q20510 EMBL-EBI
WormBase CE02744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80367 Hypothetical protein F47B7.3 [Caenorhabditis elegans] ref|NP_508648.1| F47B7.3 [Caenorhabditis elegans] 1.0E-118
blast AAA80367 Hypothetical protein F47B7.3 [Caenorhabditis elegans] ref|NP_508648.1| F47B7.3 [Caenorhabditis elegans] 1.0E-115
blast AAA80367 Hypothetical protein F47B7.3 [Caenorhabditis elegans] ref|NP_508648.1| F47B7.3 [Caenorhabditis elegans] 1.0E-111
blast NP_508647 T14G12.6 [Caenorhabditis elegans] gb|AAA82438.1| Hypothetical protein T14G12.6 [Caenorhabditis elegans] 7.0E-55
blast NP_508647 T14G12.6 [Caenorhabditis elegans] gb|AAA82438.1| Hypothetical protein T14G12.6 [Caenorhabditis elegans] 4.0E-53
blast AAC26276 Hypothetical protein F16G10.8 [Caenorhabditis elegans] ref|NP_494262.1| F16G10.8 [Caenorhabditis elegans] 2.0E-50
blast NP_508647 T14G12.6 [Caenorhabditis elegans] gb|AAA82438.1| Hypothetical protein T14G12.6 [Caenorhabditis elegans] 4.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 4.7E-77
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.2E-72
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 4.7E-77
Sequence
Target Sequence 
>C. ELEGANS:180224_AT
agagcacaatggctccgatggctccttctaccacaattgccgccgaggaaacaagattgc
ctgaggaaatgatgacaacacccgcattggagtcttcaactgtgacagaaaaagtttgtg
cagttactgaagaaaaatgcctaaatttagcaacagttgttcaaggcacaatgcaaatgt
tcgaaaaagacggctgcattgaattcatgtgccctgataacgacgctccatacttcaagg
gtgcatttgcggatagtgaaataccgccacctaccgcagatgacgaggggaatgaattaa
caatcattcgtccaaaatcgccagcacaaatagccaaggggttagttgcctattatggat
tgacttgtgtggacaataaattgacagccactgagtatccacgaggaattaattccgtca
gaacaggcgatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCACAATGGCTCCGATGGCTCC 558 69 149 Antisense
TGATGACAACACCCGCATTGGAGTC 130 567 218 Antisense
CGGCTGCATTGAATTCATGTGCCCT 450 241 339 Antisense
ATTCATGTGCCCTGATAACGACGCT 521 11 351 Antisense
GACGCTCCATACTTCAAGGGTGCAT 213 381 370 Antisense
GCCACCTACCGCAGATGACGAGGGG 662 275 414 Antisense
CAATCATTCGTCCAAAATCGCCAGC 474 181 449 Antisense
ATCGCCAGCACAAATAGCCAAGGGG 490 35 465 Antisense
GTTGCCTATTATGGATTGACTTGTG 76 441 493 Antisense
CAGCCACTGAGTATCCACGAGGAAT 420 203 533 Antisense
TAATTCCGTCAGAACAGGCGATGTT 527 633 558 Antisense
Sequence Source Affymetrix Proprietary Database