[Home] | [Total List]

[180222_at]

Description T23F4.1 /REP_DB=WormBase Gene ID /WP=CE14084 /TR=O17262 /GB=AAB71033.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 48.9
(-1.1)
A 		68.1
(0.3)
A 		23.4
(-3)
A 		105.1
(3)
A 		82
B 57.7
(0.8)
A 		41
(-0.5)
A 		9.5
(-3)
A 		85.8
(3)
A 		76
C 43.7
(-2.1)
A 		43.8
(-2.1)
A 		37.4
(-3)
A 		80
(3)
A 		43
avr 50.1
(-0.6) 		51
(-0.5) 		23.4
(-3) 		90.3
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 25.1
(-2.1)
A 		57.9
(2)
A 		30.7
(-1.4)
A 		66.3
(3)
A 		59.8
(2.2)
A 		17.9
(-3)
A 		48
B 50.6
(2.7)
A 		38.6
(1.1)
A 		7.3
(-3)
A 		43.8
(1.8)
A 		52.9
(3)
A 		30.9
(0.1)
A 		46
C 97.9
(3)
P 		24.8
(-3)
A 		65.6
(0.3)
A 		72.1
(0.9)
A 		30.5
(-2.5)
A 		55.1
(-0.5)
M 		73
avr 57.9
(2.4) 		40.4
(-1.6) 		34.5
(-3) 		60.7
(3) 		47.7
(0) 		34.6
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.8
(3)
A 		14.8
(1.5)
A 		6.1
(-3)
A 		15.4
(1.8)
A 		12
B 18.4
(3)
A 		10.1
(-0.1)
A 		2.2
(-3)
A 		18.3
(3)
A 		16
C 14.5
(3)
A 		12.6
(-3)
A 		13
(-1.7)
A 		13.5
(-0.2)
A 		2
avr 16.9
(3) 		12.5
(0.3) 		7.1
(-3) 		15.7
(2.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.6
(-2.9)
A 		20.6
(3)
A 		6.7
(-2.1)
A 		16.8
(1.6)
A 		18
(2)
A 		4.4
(-3)
A 		16
B 17.6
(1.8)
A 		12.8
(0.4)
A 		1.8
(-3)
A 		11.6
(-0)
A 		21.5
(3)
A 		11.5
(-0)
A 		20
C 36.3
(3)
P 		7.6
(-3)
A 		16.7
(-1.1)
A 		14.5
(-1.6)
A 		9.9
(-2.5)
A 		18.5
(-0.7)
M 		29
avr 19.5
(3) 		13.7
(-0.1) 		8.4
(-3) 		14.3
(0.2) 		16.5
(1.4) 		11.5
(-1.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4648
Sequence Type Exemplar sequence
Representative Public ID T23F4.1 NCBI
Target Description T23F4.1 /REP_DB=WormBase Gene ID /WP=CE14084 /TR=O17262 /GB=AAB71033.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061523 NCBI Caenorhabditis elegans T23F4.1 (T23F4.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000024153 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1166505:1169172:1 9/11 None
T23F4.1 ENSEMBL cdna:known chromosome:CEL140:II:1166496:1169172:1 gene:T23F4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1166494-1169171(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F4.1
Entrez Gene 188807 Entrez gene
SwissProt O17262 EMBL-EBI
WormBase CE14084 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71033 Hypothetical protein T23F4.1 [Caenorhabditis elegans] ref|NP_493924.1| T23F4.1 [Caenorhabditis elegans] 1.0E-154
blast AAB71033 Hypothetical protein T23F4.1 [Caenorhabditis elegans] ref|NP_493924.1| T23F4.1 [Caenorhabditis elegans] 1.0E-147
blast AAB71032 Hypothetical protein T23F4.3 [Caenorhabditis elegans] ref|NP_493925.1| T23F4.3 [Caenorhabditis elegans] 1.0E-116
blast AAB71032 Hypothetical protein T23F4.3 [Caenorhabditis elegans] ref|NP_493925.1| T23F4.3 [Caenorhabditis elegans] 1.0E-111
blast CAE62911 Hypothetical protein CBG07103 [Caenorhabditis briggsae] 4.0E-96
blast CAE62911 Hypothetical protein CBG07103 [Caenorhabditis briggsae] 2.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 4.0E-94
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 5.3E-15
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 2.6E-72
Sequence
Target Sequence 
>C. ELEGANS:180222_AT
atttggctaaggtagctcggctacgtagcttttgccgcagatacctatggaaaaggaaaa
gccgctccagatgtgaatggaaattttgccattatgggagaaccacaaccctccgcagct
ggattctgagtgcctggaactatgtaagaggtctaaaatatgtccaaactaacaatatcg
ggtcaattgggttctgttttggcgggctttgtactttggatttggcccgtttcaatgttg
gactaaaagctgctgtgtcattccatggaacacttacggattacccgggaaatggaacca
caatcgacgcttcaatccaagctcatcacggagatgcagaccctcacactacaaatcaaa
acgccgatgatttcattgaagaaatgaggagaagaaacggtgattggatgttcagtagat
acgcccacgccgtccacgccttcactctccccggagttgagaattgggaaattccaggag
ccgcatttgatcctattgcttctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGGCTAAGGTAGCTCGGCTACG 248 17 242 Antisense
AGCTCGGCTACGTAGCTTTTGCCGC 578 75 255 Antisense
GCTTTTGCCGCAGATACCTATGGAA 88 305 269 Antisense
ATTATGGGAGAACCACAACCCTCCG 285 13 332 Antisense
TCCGCAGCTGGATTCTGAGTGCCTG 152 595 353 Antisense
GGATTCTGAGTGCCTGGAACTATGT 106 509 362 Antisense
ATGGAACCACAATCGACGCTTCAAT 38 53 533 Antisense
ATCGACGCTTCAATCCAAGCTCATC 69 37 544 Antisense
AATCCAAGCTCATCACGGAGATGCA 329 167 555 Antisense
CTTCACTCTCCCCGGAGTTGAGAAT 589 221 681 Antisense
CGCATTTGATCCTATTGCTTCTAAT 249 255 723 Antisense
Sequence Source Affymetrix Proprietary Database