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[180218_at]

Description F47B7.5 /REP_DB=WormBase Gene ID /WP=CE02746 /TR=Q20512 /GB=AAA80369.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 1.1
(-3)
A 		12.7
(-1.4)
A 		26.4
(0.5)
A 		44.3
(3)
A 		43
B 9.6
(-3)
A 		30.6
(3)
A 		11.3
(-2.5)
A 		25.3
(1.5)
A 		21
C 13.8
(-1.9)
A 		26.6
(-0.1)
A 		5.5
(-3)
A 		49.9
(3)
A 		44
avr 8.2
(-3) 		23.3
(-0.1) 		14.4
(-1.8) 		39.8
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		1.2
(-3)
A 		5.6
(-2.3)
A 		36.4
(3)
A 		9
(-1.7)
A 		3
(-2.7)
A 		35
B 12
(0.4)
A 		20.7
(3)
A 		15.7
(1.5)
A 		12.2
(0.4)
A 		0.9
(-3)
A 		2.2
(-2.6)
A 		20
C 7.7
(-2.2)
A 		12.2
(-1.4)
A 		5
(-2.6)
A 		37.1
(3)
A 		22.2
(0.4)
A 		3
(-3)
A 		34
avr 7.2
(-2) 		11.4
(-1) 		8.8
(-1.6) 		28.6
(3) 		10.7
(-1.1) 		2.7
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.4
(-3)
A 		2.8
(-0.8)
A 		6.9
(3)
A 		6.5
(2.6)
A 		7
B 3.1
(-2.4)
A 		7.6
(3)
A 		2.6
(-3)
A 		5.4
(0.4)
A 		5
C 4.6
(-0.5)
A 		7.7
(2.4)
A 		1.9
(-3)
A 		8.4
(3)
A 		7
avr 2.7
(-3) 		6
(1.8) 		3.8
(-1.4) 		6.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.4
(-2.9)
A 		1.2
(-2.4)
A 		9.2
(3)
A 		2.7
(-1.4)
A 		0.7
(-2.7)
A 		9
B 4.2
(0.5)
A 		6.9
(3)
A 		3.8
(0.1)
A 		3.2
(-0.4)
A 		0.4
(-3)
A 		0.8
(-2.6)
A 		7
C 2.8
(-1.3)
A 		3.7
(-0.5)
A 		1.3
(-2.7)
A 		7.5
(3)
A 		7.2
(2.7)
A 		1
(-3)
A 		7
avr 2.4
(-1.3) 		3.7
(0) 		2.1
(-1.7) 		6.6
(3) 		3.4
(-0.3) 		0.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180218_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18253
Sequence Type Exemplar sequence
Representative Public ID F47B7.5 NCBI
Target Description F47B7.5 /REP_DB=WormBase Gene ID /WP=CE02746 /TR=Q20512 /GB=AAA80369.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076249 NCBI Caenorhabditis elegans F47B7.5 (F47B7.5) mRNA, complete cds. 11/11 None
SNAP00000025968 ENSEMBL cdna:SNAP chromosome:CEL140:X:3767779:3768801:-1 11/11 None
GENEFINDER00000025978 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3767779:3768801:-1 11/11 None
F47B7.5 ENSEMBL cdna:known chromosome:CEL140:X:3767779:3768801:-1 gene:F47B7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3767779-3768802(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B7.5
Entrez Gene 185892 Entrez gene
SwissProt Q20512 EMBL-EBI
WormBase CE02746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80369 Hypothetical protein F47B7.5 [Caenorhabditis elegans] ref|NP_508650.1| F47B7.5 [Caenorhabditis elegans] 1.0E-108
blast AAA80369 Hypothetical protein F47B7.5 [Caenorhabditis elegans] ref|NP_508650.1| F47B7.5 [Caenorhabditis elegans] 1.0E-105
blast AAC26280 Hypothetical protein F16G10.13 [Caenorhabditis elegans] ref|NP_494266.1| F16G10.13 [Caenorhabditis elegans] 2.0E-84
blast AAC26280 Hypothetical protein F16G10.13 [Caenorhabditis elegans] ref|NP_494266.1| F16G10.13 [Caenorhabditis elegans] 3.0E-82
blast AAA80368 Hypothetical protein F47B7.4 [Caenorhabditis elegans] ref|NP_508649.2| F47B7.4 [Caenorhabditis elegans] 1.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 5.3E-66
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 4.2E-62
Sequence
Target Sequence 
>C. ELEGANS:180218_AT
gagagagcacgattgctcccgaagatacgacgatgacacctggaggtgtgtctactccag
agacctccgtggaaaccgaggcgcctgagataacgataatgacaacactcgcaatggagt
catccaccgtaacgaaagaagcatgcccaacatctacaaccaagtgtcccgatttatcag
caataattaagggtgatatgagggtcgacgtggtggatggctgcgctgttttttcttgtc
ccgaaagccaacttccatatgctcttggtttaattgaaggaagcgaaataacaggatttt
cagtacctgctggagtaactcagtttgtactccaacaaccattggaaatagaagagttag
gtggcggaactgtaaatgattactatgggctctcatgtgagaacaatatgcttatagcct
cgatatatccacaaggaattgctgttggattcacgcttgcaggcgctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGAGCACGATTGCTCCCGAAGA 189 395 80 Antisense
GATACGACGATGACACCTGGAGGTG 656 423 103 Antisense
ACCGAGGCGCCTGAGATAACGATAA 500 89 154 Antisense
AACACTCGCAATGGAGTCATCCACC 53 137 183 Antisense
TGGAGTCATCCACCGTAACGAAAGA 252 547 194 Antisense
ACGAAAGAAGCATGCCCAACATCTA 199 91 211 Antisense
TGAGGGTCGACGTGGTGGATGGCTG 599 551 278 Antisense
GAAAGCCAACTTCCATATGCTCTTG 427 359 322 Antisense
TTTCAGTACCTGCTGGAGTAACTCA 135 671 377 Antisense
AACTCAGTTTGTACTCCAACAACCA 211 141 396 Antisense
TGGATTCACGCTTGCAGGCGCTGAT 131 551 525 Antisense
Sequence Source Affymetrix Proprietary Database