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[180216_at]

Description Y20C6A.2 /REP_DB=WormBase Gene ID /WP=CE20200 /TR=Q9XXS3 /GB=CAA16305.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 15      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 22.2
(3)
A 		7.3
(-2.2)
A 		5
(-3)
A 		12.4
(-0.4)
A 		17
B 40
(3)
A 		8.7
(-2.6)
A 		20.2
(-0.5)
A 		6.3
(-3)
A 		34
C 27.3
(-1)
A 		9.9
(-2.7)
A 		7.2
(-3)
A 		68.5
(3)
A 		61
avr 29.8
(3) 		8.6
(-3) 		10.8
(-2.4) 		29.1
(2.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5
(1)
A 		2.7
(-2.1)
A 		5.7
(1.9)
A 		2
(-3)
A 		6.5
(3)
A 		2.7
(-2.1)
A 		5
B 17.1
(3)
A 		10.7
(0.2)
A 		5.5
(-2)
A 		3.3
(-3)
A 		5.2
(-2.2)
A 		7.5
(-1.2)
A 		14
C 6
(-2)
A 		13.6
(0.1)
A 		7.1
(-1.7)
A 		24.5
(3)
A 		2.3
(-3)
A 		17.3
(1.1)
A 		22
avr 9.4
(2.4) 		9
(2) 		6.1
(-1.4) 		9.9
(3) 		4.7
(-3) 		9.2
(2.2) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.1
(3)
A 		1.6
(-2.7)
A 		1.3
(-3)
A 		1.8
(-2.6)
A 		7
B 12.8
(3)
A 		2.1
(-2.6)
A 		4.7
(-1.3)
A 		1.4
(-3)
A 		11
C 9
(1.3)
A 		2.8
(-2.8)
A 		2.5
(-3)
A 		11.5
(3)
A 		9
avr 10
(3) 		2.2
(-3) 		2.8
(-2.5) 		4.9
(-0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.9
(-1.4)
A 		1
(-1)
A 		1.2
(-0.2)
A 		0.5
(-3)
A 		2
(3)
A 		0.7
(-2.2)
A 		2
B 5.9
(3)
A 		3.6
(0.2)
A 		1.3
(-2.5)
A 		0.9
(-3)
A 		2.1
(-1.6)
A 		2.8
(-0.7)
A 		5
C 2.2
(-1.3)
A 		4.2
(1.1)
A 		1.8
(-1.8)
A 		4.9
(1.9)
A 		0.8
(-3)
A 		5.8
(3)
A 		5
avr 3
(2.6) 		2.9
(2.3) 		1.4
(-3) 		2.1
(-0.5) 		1.6
(-2.3) 		3.1
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13388
Sequence Type Exemplar sequence
Representative Public ID Y20C6A.2 NCBI
Target Description Y20C6A.2 /REP_DB=WormBase Gene ID /WP=CE20200 /TR=Q9XXS3 /GB=CAA16305.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074997 NCBI Caenorhabditis elegans Y20C6A.2 (Y20C6A.2) mRNA, complete cds. 11/11 None
SNAP00000029065 ENSEMBL cdna:SNAP chromosome:CEL140:V:17382869:17383696:1 11/11 None
GENEFINDER00000029069 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17382869:17383696:1 11/11 None
Y20C6A.2 ENSEMBL cdna:known chromosome:CEL140:V:17380861:17383696:1 gene:Y20C6A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17380860-17383696(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y20C6A.2
Entrez Gene 189498 Entrez gene
SwissProt Q9XXS3 EMBL-EBI
WormBase CE20200 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16305 Hypothetical protein Y20C6A.2 [Caenorhabditis elegans] ref|NP_507398.1| Y20C6A.2 [Caenorhabditis elegans] 0.0
blast CAA16305 Hypothetical protein Y20C6A.2 [Caenorhabditis elegans] ref|NP_507398.1| Y20C6A.2 [Caenorhabditis elegans] 1.0E-159
blast T29660 hypothetical protein R08C7.9 - Caenorhabditis elegans 1.0E-25
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 2.0E-17
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 4.0E-12
blast T29660 hypothetical protein R08C7.9 - Caenorhabditis elegans 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:180216_AT
gacaatgcatcgatcactaccaagaggttttttggcataaaaaaaagattttcattgaaa
ttgagcgtaccgcaaccgactaccagtggatttacgaagaatttaaagatatcaagtttg
aatccctgaatgggctcgaatgggctcgaagatgcgcaatgaacttttcccggcaatgtg
acgaggttgacttgggcggcgagccactattcacgcaaactgcttgtgagtttcaaaact
ttgtttgtcaaaaattcaccgatttgaaatcggccaagaaatgcacattgaacgatttgc
tggttatggaatctcaaaactttgtatcatcgattgactttgaggagctcaacttgtttc
tgaaattctggattgaagggtattttcaacaactgaaatttatggagttgtctgtggaaa
gtgatatgtctgatcaggagaatattgcgatcttattcaaaaacatcagatatgaaaagg
cacctaataataaggtatttgagtacagatatccatggagttttcgaggaggacggtata
ttcaaagcaaagatggaattactgccgttgtcgggtttcgatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATGCATCGATCACTACCAAGA 213 363 1109 Antisense
AATTGAGCGTACCGCAACCGACTAC 552 173 1167 Antisense
GCAACCGACTACCAGTGGATTTACG 164 319 1180 Antisense
GTTTGAATCCCTGAATGGGCTCGAA 647 451 1224 Antisense
GGGCTCGAATGGGCTCGAAGATGCG 161 491 1240 Antisense
CGAAGATGCGCAATGAACTTTTCCC 119 253 1255 Antisense
TTTTCCCGGCAATGTGACGAGGTTG 81 667 1273 Antisense
TGACGAGGTTGACTTGGGCGGCGAG 591 565 1287 Antisense
CTATTCACGCAAACTGCTTGTGAGT 86 225 1315 Antisense
AGATGGAATTACTGCCGTTGTCGGG 602 61 1659 Antisense
CTGCCGTTGTCGGGTTTCGATTTCT 593 229 1670 Antisense
Sequence Source Affymetrix Proprietary Database