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[180215_at]

Description ZC132.6 /REP_DB=WormBase Gene ID /WP=CE15046 /TR=O17518 /GB=AAB63928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.8
(-3)
A 		3.6
(-0.9)
A 		1.5
(-2.5)
A 		8.7
(3)
A 		8
B 2
(-3)
A 		3.3
(-0.9)
A 		5.8
(3)
A 		5.2
(2.1)
A 		4
C 1.3
(-3)
A 		5.5
(-1.2)
A 		2
(-2.7)
A 		15.5
(3)
A 		14
avr 1.4
(-3) 		4.1
(-1.1) 		3.1
(-1.8) 		9.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.5
(-2.7)
A 		1.2
(-3)
A 		1.5
(-2.7)
A 		4.1
(-0.1)
A 		1.6
(-2.6)
A 		7.2
(3)
A 		6
B 3.4
(3)
A 		2.2
(-3)
A 		3.2
(2)
A 		2.4
(-2)
A 		3
(1)
A 		2.2
(-3)
A 		1
C 2.5
(-2.5)
A 		2.7
(-2.4)
A 		4.1
(-1.9)
A 		17.3
(3)
A 		1.1
(-3)
A 		8.2
(-0.4)
A 		16
avr 2.5
(-2.4) 		2
(-2.9) 		2.9
(-2) 		7.9
(3) 		1.9
(-3) 		5.9
(1) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.3
(-3)
A 		0.8
(0)
A 		0.4
(-2.4)
A 		1.3
(3)
A 		1
B 0.6
(-3)
A 		0.8
(-1.3)
A 		1.3
(3)
A 		1.1
(1.3)
A 		1
C 0.4
(-3)
A 		1.6
(0.3)
A 		0.7
(-2.2)
A 		2.6
(3)
A 		2
avr 0.4
(-3) 		1.1
(0.2) 		0.8
(-1.2) 		1.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.4
(-2.6)
A 		0.3
(-3)
A 		1
(-0)
A 		0.5
(-2.1)
A 		1.7
(3)
A 		1
B 1.2
(3)
A 		0.7
(-2)
A 		0.8
(-1)
A 		0.6
(-3)
A 		1.2
(3)
A 		0.8
(-1)
A 		1
C 0.9
(-2)
A 		0.8
(-2.2)
A 		1
(-1.8)
A 		3.5
(3)
A 		0.4
(-3)
A 		2.7
(1.5)
A 		3
avr 0.8
(-1.9) 		0.6
(-3) 		0.7
(-2.5) 		1.7
(3) 		0.7
(-2.5) 		1.7
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15632
Sequence Type Exemplar sequence
Representative Public ID ZC132.6 NCBI
Target Description ZC132.6 /REP_DB=WormBase Gene ID /WP=CE15046 /TR=O17518 /GB=AAB63928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071787 NCBI Caenorhabditis elegans ZC132.6 (ZC132.6) mRNA, complete cds. 11/11 None
SNAP00000042301 ENSEMBL cdna:SNAP chromosome:CEL140:V:4301107:4310201:-1 9/11 None
GENEFINDER00000042311 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4308521:4310201:-1 9/11 None
ZC132.6 ENSEMBL cdna:known chromosome:CEL140:V:4309110:4310018:-1 gene:ZC132.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl ZC132.6
Entrez Gene 191082 Entrez gene
SwissProt O17518 EMBL-EBI
WormBase CE38012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB63932 Hypothetical protein ZC132.5 [Caenorhabditis elegans] ref|NP_504187.1| ZC132.5 [Caenorhabditis elegans] 0.0
blast AAB63927 Hypothetical protein ZC132.4 [Caenorhabditis elegans] ref|NP_504186.1| ZC132.4 [Caenorhabditis elegans] 0.0
blast AAB63928 Hypothetical protein ZC132.6 [Caenorhabditis elegans] ref|NP_504188.2| ZC132.6 [Caenorhabditis elegans] 1.0E-160
blast AAB63928 Hypothetical protein ZC132.6 [Caenorhabditis elegans] ref|NP_504188.2| ZC132.6 [Caenorhabditis elegans] 1.0E-147
blast AAB63928 Hypothetical protein ZC132.6 [Caenorhabditis elegans] ref|NP_504188.2| ZC132.6 [Caenorhabditis elegans] 1.0E-146
blast AAB96710 Hypothetical protein F49D11.4 [Caenorhabditis elegans] ref|NP_492845.1| F49D11.4 [Caenorhabditis elegans] 6.0E-41
blast AAB96710 Hypothetical protein F49D11.4 [Caenorhabditis elegans] ref|NP_492845.1| F49D11.4 [Caenorhabditis elegans] 3.0E-26
blast CAA82797 gag protein [Ascaris lumbricoides] 5.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.9E-6
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.1E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000042301 1 2438-2460
Sequence
Target Sequence 
>C. ELEGANS:180215_AT
gattactgggagctcttgaaggtgaacccaaaaccttggcaaccaagtatcagatcacat
ctgagaactacgccaaagcagttgaggcacttaaaaacaagtacaccaactcagaaagca
ccatcaatagcttgaatgaaaagctgctgaaggaaaaatcgaaaaatgattcgattcaag
ctcaaaaagagctatacgaaaacttggtcatcataattgatcagttacgccagttaggcg
aacatctcgaagacagaattttcaaagatcttctattgaagaagttctcagagaagatca
gaagaaaagtctacgaacaaaaactcaaagaccagggaacatggaccacagatcgtctaa
tcaaggacattgaaaaaatcctgacgatcgaagaggacctgcaaagtctcatgaagacgt
cccaaaatgagtcgcaaccaaatccagcagcaaagtcgaaagacaaatctgcaaaaacgt
ttgaccgtcagtgtctttactgtaagtcaacaaaacatgctctccacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTACTGGGAGCTCTTGAAGGTGA 181 429 542 Antisense
TTGGCAACCAAGTATCAGATCACAT 332 709 577 Antisense
TCACATCTGAGAACTACGCCAAAGC 522 625 596 Antisense
GTACACCAACTCAGAAAGCACCATC 391 459 642 Antisense
AATTGATCAGTTACGCCAGTTAGGC 391 177 756 Antisense
CATGGACCACAGATCGTCTAATCAA 516 209 881 Antisense
GAAGAGGACCTGCAAAGTCTCATGA 563 335 931 Antisense
GACGTCCCAAAATGAGTCGCAACCA 474 377 957 Antisense
GTCGCAACCAAATCCAGCAGCAAAG 87 475 972 Antisense
GTTTGACCGTCAGTGTCTTTACTGT 638 451 1020 Antisense
GTCAACAAAACATGCTCTCCACAAG 602 463 1047 Antisense
Sequence Source Affymetrix Proprietary Database