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[180214_at]

Description T13C2.3 /REP_DB=WormBase Gene ID /WP=CE04939 /TR=Q22454 /GB=AAA81135.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 04      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 60      6grp_total > 14      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 729
1 2 3 4 range
A 635.3
(1.1)
P 		848.4
(3)
P 		596.4
(0.8)
P 		163.2
(-3)
P 		685
B 694.9
(3)
P 		659.4
(2.6)
P 		664
(2.7)
P 		119
(-3)
P 		576
C 567.2
(1.5)
P 		698.4
(3)
P 		679.5
(2.8)
P 		157.1
(-3)
P 		541
avr 632.5
(2) 		735.4
(3) 		646.6
(2.1) 		146.4
(-3) 		589

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 547.5
(3)
P 		457.6
(1.6)
P 		354
(0)
P 		321.5
(-0.5)
P 		323.7
(-0.5)
P 		158.7
(-3)
P 		389
B 492.4
(3)
P 		460.2
(2.5)
P 		337.2
(0.5)
P 		330.4
(0.3)
P 		200.1
(-1.8)
P 		126
(-3)
P 		366
C 473.8
(3)
P 		355.4
(1)
P 		404.9
(1.8)
P 		321.6
(0.4)
P 		223.4
(-1.3)
P 		120.6
(-3)
P 		353
avr 504.6
(3) 		424.4
(1.7) 		365.4
(0.7) 		324.5
(0.1) 		249.1
(-1.1) 		135.1
(-3) 		370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 231.3
(3)
P 		184.2
(1.6)
P 		155.9
(0.8)
P 		23.9
(-3)
P 		207
B 221.6
(3)
P 		162.9
(1.2)
P 		153.9
(0.9)
P 		25.3
(-3)
P 		196
C 187.8
(1.6)
P 		200.8
(2)
P 		236.8
(3)
P 		26.5
(-3)
P 		210
avr 213.6
(3) 		182.6
(2) 		182.2
(2) 		25.2
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 100.9
(0)
P 		162.7
(3)
P 		77.1
(-1.1)
P 		81.5
(-0.9)
P 		97.7
(-0.1)
P 		38.6
(-3)
P 		124
B 171.3
(3)
P 		153.2
(2.1)
P 		81.9
(-1.3)
P 		87.5
(-1)
P 		81.3
(-1.3)
P 		47
(-3)
P 		124
C 175.6
(3)
P 		108.4
(0)
P 		103.1
(-0.2)
P 		64.7
(-1.9)
P 		72.3
(-1.6)
P 		40.4
(-3)
P 		135
avr 149.3
(3) 		141.4
(2.6) 		87.4
(-0.5) 		77.9
(-1) 		83.8
(-0.7) 		42
(-3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5922
Sequence Type Exemplar sequence
Representative Public ID T13C2.3 NCBI
Target Description T13C2.3 /REP_DB=WormBase Gene ID /WP=CE04939 /TR=Q22454 /GB=AAA81135.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027173(11), NM_001027172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027173 NCBI Caenorhabditis elegans T13C2.3b (T13C2.3) mRNA, complete cds. 11/11 None
NM_001027172 NCBI Caenorhabditis elegans T13C2.3a (T13C2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000037681 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6789213:6793729:1 9/11 None
T13C2.3b ENSEMBL cdna:known chromosome:CEL140:II:6789178:6791712:1 gene:T13C2.3 11/11 None
T13C2.3a ENSEMBL cdna:known chromosome:CEL140:II:6789977:6791671:1 gene:T13C2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037674 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6789350-6791666(+) 91.86 100.0
Public Domain and Genome References
Ensembl T13C2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR12976 Hypothetical protein T13C2.3b [Caenorhabditis elegans] ref|NP_001022344.1| T13C2.3b [Caenorhabditis elegans] 0.0
blast AAT81189 Hypothetical protein T13C2.2 [Caenorhabditis elegans] ref|NP_495389.2| T13C2.2 [Caenorhabditis elegans] 0.0
blast AAA81135 Hypothetical protein T13C2.3a [Caenorhabditis elegans] ref|NP_001022343.1| T13C2.3a [Caenorhabditis elegans] 1.0E-172
blast AAA81135 Hypothetical protein T13C2.3a [Caenorhabditis elegans] ref|NP_001022343.1| T13C2.3a [Caenorhabditis elegans] 1.0E-163
blast AAR12976 Hypothetical protein T13C2.3b [Caenorhabditis elegans] ref|NP_001022344.1| T13C2.3b [Caenorhabditis elegans] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:180214_AT
actacttccagtcctacaacaacggcttcagctatgtcaaagagcaaaactttcaacacg
aaacactctttagatgaagatgaagaagaggagccacatcaatcaactcattgtgtatat
cgtcacctgaataatgaattctatcgatattgtcttcttgtccatcaatctcgagatgct
cctgataaagaatcatgtgatcccacagaaatggatctaattgttccaccaccaatgaat
ggaaaagctcttccaccacgtgtaattgtaactattccaccaagtactacatccactaca
acaagcacaacaactacaacgactacaacaactacagaagagcctaccactacaacaact
tcagcaccgacgacgacaacgccggagccatcaaagtatcctccgctgcctccacaaatc
tatcggccgaggcctattgatcaaatgaagaggaggaaacagactcctaaaaaatgtcgt
gttgcatacgtgcgcaccaaatcgggttcccgaacccgtccagtactggtttgtgattcg
gcttccgctgccaactcaacttcgttccctattttccttgtttgctcatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACTTCCAGTCCTACAACAACGG 555 99 553 Antisense
ACAACAACGGCTTCAGCTATGTCAA 209 113 568 Antisense
AGAGGAGCCACATCAATCAACTCAT 528 67 639 Antisense
CTATCGATATTGTCTTCTTGTCCAT 261 225 693 Antisense
GTCCATCAATCTCGAGATGCTCCTG 540 477 712 Antisense
AGCTCTTCCACCACGTGTAATTGTA 97 79 798 Antisense
GACAACGCCGGAGCCATCAAAGTAT 479 365 927 Antisense
CTCCACAAATCTATCGGCCGAGGCC 676 233 962 Antisense
GTGTTGCATACGTGCGCACCAAATC 424 485 1031 Antisense
GTACTGGTTTGTGATTCGGCTTCCG 147 459 1075 Antisense
CCTATTTTCCTTGTTTGCTCATTTG 59 269 1120 Antisense
Sequence Source Affymetrix Proprietary Database