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[180213_at]

Description F29A7.2 /REP_DB=WormBase Gene ID /WP=CE09773 /TR=O16211 /GB=AAB65272.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 2.3
(-3)
A 		15.8
(-1.3)
A 		31.9
(0.7)
A 		49.9
(3)
A 		48
B 2.8
(-2.2)
A 		2.9
(-2.1)
A 		1.9
(-3)
A 		8.7
(3)
A 		7
C 3.2
(-2.6)
A 		29.4
(3)
A 		1.3
(-3)
A 		7.7
(-1.6)
A 		28
avr 2.8
(-3) 		16
(1.1) 		11.7
(-0.2) 		22.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.2
(-3)
A 		3.1
(-3)
A 		29
(2.4)
A 		5.1
(-2.6)
A 		14.4
(-0.6)
A 		31.9
(3)
A 		29
B 7.1
(-1.5)
A 		4.2
(-2.3)
A 		1.3
(-3)
A 		2.7
(-2.6)
A 		2.6
(-2.7)
A 		25.2
(3)
A 		24
C 16.8
(3)
A 		15.7
(2.6)
A 		2.4
(-2.6)
A 		7.8
(-0.5)
A 		1.5
(-3)
A 		11.4
(0.9)
A 		15
avr 9
(-1.7) 		7.7
(-2.1) 		10.9
(-1.1) 		5.2
(-3) 		6.2
(-2.7) 		22.8
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.8
(-3)
A 		3.4
(-0.9)
A 		8.3
(3)
A 		7.3
(2.2)
A 		8
B 0.9
(-0.9)
A 		0.7
(-1.7)
A 		0.4
(-3)
A 		1.8
(3)
A 		1
C 1.1
(-2.6)
A 		8.5
(3)
A 		0.5
(-3)
A 		1.3
(-2.4)
A 		8
avr 0.9
(-3) 		4.2
(3) 		3.1
(1) 		3.5
(1.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.1
(-2.6)
A 		6.3
(1.8)
A 		1.3
(-2.4)
A 		4.3
(0.1)
A 		7.8
(3)
A 		7
B 2.5
(-1.5)
A 		1.4
(-2.3)
A 		0.3
(-3)
A 		0.7
(-2.7)
A 		1
(-2.5)
A 		9.4
(3)
A 		9
C 6.2
(3)
A 		4.8
(1.5)
A 		0.6
(-2.9)
A 		1.6
(-1.8)
A 		0.5
(-3)
A 		3.8
(0.5)
A 		6
avr 3.1
(-1) 		2.4
(-1.8) 		2.4
(-1.8) 		1.2
(-3) 		1.9
(-2.3) 		7
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5681
Sequence Type Exemplar sequence
Representative Public ID F29A7.2 NCBI
Target Description F29A7.2 /REP_DB=WormBase Gene ID /WP=CE09773 /TR=O16211 /GB=AAB65272.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061952 NCBI Caenorhabditis elegans F29A7.2 (F29A7.2) mRNA, complete cds. 11/11 None
SNAP00000030197 ENSEMBL cdna:SNAP chromosome:CEL140:II:2758000:2764015:1 11/11 None
GENEFINDER00000030205 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2758000:2761856:1 11/11 None
F29A7.2 ENSEMBL cdna:known chromosome:CEL140:II:2758625:2761856:1 gene:F29A7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2758348-2761855(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29A7.2
Entrez Gene 173619 Entrez gene
SwissProt O16211 EMBL-EBI
WormBase CE36834 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65272 Hypothetical protein F29A7.2 [Caenorhabditis elegans] ref|NP_494353.2| F29A7.2 [Caenorhabditis elegans] 0.0
blast AAB65271 Hypothetical protein F29A7.1 [Caenorhabditis elegans] ref|NP_494354.1| F29A7.1 [Caenorhabditis elegans] 0.0
blast AAB65272 Hypothetical protein F29A7.2 [Caenorhabditis elegans] ref|NP_494353.2| F29A7.2 [Caenorhabditis elegans] 1.0E-165
blast AAB65272 Hypothetical protein F29A7.2 [Caenorhabditis elegans] ref|NP_494353.2| F29A7.2 [Caenorhabditis elegans] 1.0E-164
blast AAB37932 Hypothetical protein F08D12.8 [Caenorhabditis elegans] ref|NP_494357.1| F08D12.8 [Caenorhabditis elegans] 3.0E-49
blast AAB65271 Hypothetical protein F29A7.1 [Caenorhabditis elegans] ref|NP_494354.1| F29A7.1 [Caenorhabditis elegans] 8.0E-41
blast AAB65271 Hypothetical protein F29A7.1 [Caenorhabditis elegans] ref|NP_494354.1| F29A7.1 [Caenorhabditis elegans] 9.0E-38
blast AAK68304 Hypothetical protein F08D12.6 [Caenorhabditis elegans] ref|NP_494355.1| F08D12.6 [Caenorhabditis elegans] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-8
Sequence
Target Sequence 
>C. ELEGANS:180213_AT
cacccgtatttactgtttttcgcagtgcaaatgaagggaactgcaacaatgtttgccgag
cactgaacgacctgaaaatgaatgttgagttgatcaattgttcggagaatgttgagcaaa
gtgtcgtcgcgatgattcgacacaagattatggtaatctttcgccacgccgattctcctt
tgatgccaaatcgtaagatgctgattcagaacttcggtttggtcttctatgtcagtgttg
gttcaggacgtcattttacactaaacgatcttctcgtcatgaacacttgccacctgcatc
tgacagattctaaattgtcatccgaagatttgaatatttttatcaagtctatgattaata
cgcccgatcaattgctggaagatgttcaatttcttcaagtttctgaaagaccaaattgga
atatgaatgttgtgctgaaaggcttgccgagcacatctccgaacgatacgtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCCGTATTTACTGTTTTTCGCAG 578 199 428 Antisense
GTTGAGCAAAGTGTCGTCGCGATGA 20 439 538 Antisense
GATTATGGTAATCTTTCGCCACGCC 19 431 573 Antisense
GATTCTCCTTTGATGCCAAATCGTA 16 433 598 Antisense
GAACTTCGGTTTGGTCTTCTATGTC 51 351 636 Antisense
GGTCTTCTATGTCAGTGTTGGTTCA 320 503 648 Antisense
GTTGGTTCAGGACGTCATTTTACAC 37 437 664 Antisense
TGCCACCTGCATCTGACAGATTCTA 630 585 715 Antisense
TAATACGCCCGATCAATTGCTGGAA 326 635 783 Antisense
CTGAAAGGCTTGCCGAGCACATCTC 638 237 862 Antisense
AGCACATCTCCGAACGATACGTATC 112 77 877 Antisense
Sequence Source Affymetrix Proprietary Database