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[180210_s_at]

Description Y20C6A.1 /REP_DB=WormBase Gene ID /WP=CE16600 /TR=O62253 /GB=CAB07212.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_high_8_8 > 01      6grp_highest_nonorm > 90      6grp_total > 70      4grp_total > 23      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 157.5
(3)
P 		62.8
(-3)
P 		72
(-2.4)
A 		114.1
(0.3)
A 		95
B 107.9
(2.1)
P 		84.6
(-0.8)
A 		67.7
(-3)
A 		114.6
(3)
P 		47
C 117.8
(3)
P 		95.4
(-0)
A 		73.3
(-3)
P 		111.2
(2.1)
A 		45
avr 127.7
(3) 		80.9
(-2) 		71
(-3) 		113.3
(1.5) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 92.1
(-3)
P 		143.1
(1.6)
P 		91.8
(-3)
P 		158.9
(3)
P 		120.4
(-0.4)
P 		104.4
(-1.9)
P 		67
B 100.1
(-3)
P 		103.1
(-2.7)
P 		158.8
(3)
P 		131.8
(0.2)
P 		109.6
(-2)
P 		122.9
(-0.7)
P 		59
C 105.9
(-3)
P 		136
(0.1)
P 		121
(-1.5)
P 		165.1
(3)
P 		113.3
(-2.3)
P 		113.7
(-2.2)
P 		59
avr 99.4
(-3) 		127.4
(0.2) 		123.9
(-0.2) 		151.9
(3) 		114.4
(-1.3) 		113.7
(-1.4) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 57.4
(3)
P 		13.6
(-3)
P 		18.8
(-2.3)
A 		16.7
(-2.6)
A 		44
B 34.4
(3)
P 		20.9
(-1.3)
A 		15.7
(-3)
A 		24.4
(-0.2)
P 		19
C 39
(3)
P 		27.4
(-0.4)
A 		25.5
(-1)
P 		18.8
(-3)
A 		20
avr 43.6
(3) 		20.6
(-2.8) 		20
(-3) 		20
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 17
(-3)
P 		50.9
(3)
P 		20
(-2.5)
P 		40.3
(1.1)
P 		36.3
(0.4)
P 		25.4
(-1.5)
P 		34
B 34.8
(-2.7)
P 		34.3
(-3)
P 		38.6
(-0.8)
P 		34.9
(-2.7)
P 		44.5
(2.3)
P 		45.8
(3)
P 		12
C 39.3
(1.8)
P 		41.5
(3)
P 		30.8
(-3)
P 		33.2
(-1.7)
P 		36.7
(0.3)
P 		38.1
(1.1)
P 		11
avr 30.4
(-2.7) 		42.2
(3) 		29.8
(-3) 		36.1
(0) 		39.2
(1.5) 		36.4
(0.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180210_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13282
Sequence Type Exemplar sequence
Representative Public ID Y20C6A.1 NCBI
Target Description Y20C6A.1 /REP_DB=WormBase Gene ID /WP=CE16600 /TR=O62253 /GB=CAB07212.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074996 NCBI Caenorhabditis elegans Y20C6A.1 (Y20C6A.1) mRNA, complete cds. 11/11 None
Y20C6A.1 ENSEMBL cdna:known chromosome:CEL140:V:17374121:17379314:-1 gene:Y20C6A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029063 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17374181-17379280(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y20C6A.1
Entrez Gene 180151 Entrez gene
SwissProt O62253 EMBL-EBI
WormBase CE37058 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07212 Hypothetical protein Y20C6A.1 [Caenorhabditis elegans] emb|CAA16306.3| Hypothetical protein Y20C6A.1 [Caenorhabditis elegans] ref|NP_507397.3| Y20C6A.1 [Caenorhabditis elegans] 0.0
blast CAB07492 Hypothetical protein Y6G8.2 [Caenorhabditis elegans] ref|NP_507455.1| Y6G8.2 [Caenorhabditis elegans] 0.0
blast CAB07204 Hypothetical protein F47H4.2 [Caenorhabditis elegans] ref|NP_507396.2| F47H4.2 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.9E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.7E-19
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-23
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.1E-6
Sequence
Target Sequence 
>C. ELEGANS:180210_S_AT
gtcaagtgcattgtcatgctgggcgttgatctaccgatcataagaaggatcctgtcttat
ttggataaaaatgagctgaaaatgattttcttgaactatgacgcatatagtagagttgag
gaagaggagcttgacactactaaacttgtggaattggatcaatggaaaatggcagaagag
cttcgggtccttgactgcggactttcattttccgtcgaaaatatcgggcattttctgaaa
gttgaagtcactttacgcacaatttccgttgaagacttggtttatctaaaggaggtaggc
ataatacaagtaattgatggttatctatggtataaatttcagatcttcaaaacctcatcc
gccaatcgaaatttcaacattaaatccaggtcattcgatgcaggagatttggtgccaact
cttggtgcatcgtctagtgacaccaaagaaggtgtcatacataaaaagtggttttttaaa
atgaaaatagacagacagagagcagtttgtatagattatctagagcgtatcgcaggagaa
agggagatcacagtctttgtgttttcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAGTGCATTGTCATGCTGGGCG 693 463 2122 Antisense
TGCTGGGCGTTGATCTACCGATCAT 491 583 2138 Antisense
AGGAGCTTGACACTACTAAACTTGT 369 53 2246 Antisense
GGCAGAAGAGCTTCGGGTCCTTGAC 320 535 2292 Antisense
GACTGCGGACTTTCATTTTCCGTCG 701 373 2314 Antisense
TGAAGTCACTTTACGCACAATTTCC 316 575 2364 Antisense
ATCCGCCAATCGAAATTTCAACATT 279 39 2478 Antisense
AATCCAGGTCATTCGATGCAGGAGA 398 167 2504 Antisense
GAGATTTGGTGCCAACTCTTGGTGC 631 395 2525 Antisense
ACTCTTGGTGCATCGTCTAGTGACA 668 99 2539 Antisense
GATCACAGTCTTTGTGTTTTCCCAT 258 421 2667 Antisense
Sequence Source Affymetrix Proprietary Database