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[180209_at]

Description ZC204.6 /REP_DB=WormBase Gene ID /WP=CE15094 /TR=P91537 /GB=AAB37916.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 59      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 3.7
(-2.6)
A 		6.5
(-2.1)
A 		32.9
(3)
A 		1.8
(-3)
A 		31
B 33
(3)
A 		31.6
(2.2)
A 		23.1
(-3)
A 		27.6
(-0.3)
A 		10
C 26.6
(-0.1)
A 		52.3
(3)
A 		26.9
(-0.1)
A 		2.7
(-3)
A 		50
avr 21.1
(0.2) 		30.1
(3) 		27.6
(2.2) 		10.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 6.1
(-2.4)
A 		22.8
(1)
A 		22.8
(1)
A 		32.5
(3)
A 		32.3
(3)
A 		3
(-3)
A 		30
B 1.1
(-3)
A 		41.7
(3)
A 		37.8
(2.4)
A 		13.2
(-1.2)
A 		1.3
(-3)
A 		17.1
(-0.6)
A 		41
C 34.3
(1.3)
A 		2.1
(-3)
A 		34.6
(1.3)
A 		47.5
(3)
A 		18.5
(-0.8)
A 		3.7
(-2.8)
A 		45
avr 13.8
(-1.5) 		22.2
(0.6) 		31.7
(3) 		31.1
(2.8) 		17.4
(-0.6) 		7.9
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.4
(-2.2)
A 		1.4
(-2.2)
A 		8.6
(3)
A 		0.3
(-3)
A 		8
B 10.5
(3)
A 		7.8
(-0.2)
A 		5.4
(-3)
A 		5.9
(-2.4)
A 		5
C 8.8
(0.5)
A 		15
(3)
A 		9.4
(0.7)
A 		0.4
(-3)
A 		15
avr 6.9
(1.8) 		8.1
(3) 		7.8
(2.7) 		2.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		8.1
(1.9)
A 		5
(-0.1)
A 		8.2
(2)
A 		9.7
(3)
A 		0.7
(-3)
A 		9
B 0.4
(-3)
A 		13.9
(3)
A 		9.2
(0.9)
A 		3.5
(-1.6)
A 		0.5
(-3)
A 		6.4
(-0.3)
A 		14
C 12.7
(3)
A 		0.6
(-3)
A 		8.8
(1.1)
A 		9.5
(1.4)
A 		6
(-0.3)
A 		1.2
(-2.7)
A 		12
avr 4.7
(-0.7) 		7.5
(2.8) 		7.7
(3) 		7.1
(2.3) 		5.4
(0.2) 		2.8
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5566
Sequence Type Exemplar sequence
Representative Public ID ZC204.6 NCBI
Target Description ZC204.6 /REP_DB=WormBase Gene ID /WP=CE15094 /TR=P91537 /GB=AAB37916.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061621 NCBI Caenorhabditis elegans ZC204.6 (ZC204.6) mRNA, complete cds. 11/11 None
SNAP00000031405 ENSEMBL cdna:SNAP chromosome:CEL140:II:1644062:1644817:-1 10/11 None
GENEFINDER00000031429 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1640952:1644817:-1 10/11 None
ZC204.6 ENSEMBL cdna:known chromosome:CEL140:II:1644252:1644817:-1 gene:ZC204.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1644250-1644816(-) 91.42 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC204.6
Entrez Gene 191111 Entrez gene
SwissProt P91537 EMBL-EBI
WormBase CE15094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37916 Hypothetical protein ZC204.6 [Caenorhabditis elegans] ref|NP_494022.1| ZC204.6 [Caenorhabditis elegans] 3.0E-66
blast AAB37916 Hypothetical protein ZC204.6 [Caenorhabditis elegans] ref|NP_494022.1| ZC204.6 [Caenorhabditis elegans] 8.0E-56
blast AAB37916 Hypothetical protein ZC204.6 [Caenorhabditis elegans] ref|NP_494022.1| ZC204.6 [Caenorhabditis elegans] 5.0E-55
blast AAB37917 Hypothetical protein ZC204.8 [Caenorhabditis elegans] ref|NP_494023.1| ZC204.8 [Caenorhabditis elegans] 1.0E-46
blast AAB37917 Hypothetical protein ZC204.8 [Caenorhabditis elegans] ref|NP_494023.1| ZC204.8 [Caenorhabditis elegans] 4.0E-14
blast AAB37917 Hypothetical protein ZC204.8 [Caenorhabditis elegans] ref|NP_494023.1| ZC204.8 [Caenorhabditis elegans] 6.0E-14
Sequence
Target Sequence 
>C. ELEGANS:180209_AT
gatattctgcggatgcggactaccagccggtgattcggctacaacgactgaagtctccac
tgtcccaccttccaccacaacgactgaagtctccactgtcccaccttccaccacaaccga
gaagaagaatctcgaagagcgaattctaccggttgctgtcttgcaaggtgagcacattcg
tgtggctcgggagaacacgacaactctttcaccaacgacaactccaacggtgaagtgtcc
ttgcaagcctcttcccgactttttcgcgaatcccgagaacactgattacaccgctgggac
aggatgttttgggcatagtatcaagtgtaccagtcaaccggcgacgttcataaccaattg
gtggaacacttcgagtccaactccgtttttgtatattaacaaggaaaatactactttggt
gagtttgactagcgggcctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTCTGCGGATGCGGACTACCA 697 425 54 Antisense
GCGGACTACCAGCCGGTGATTCGGC 155 293 68 Antisense
AGCGAATTCTACCGGTTGCTGTCTT 317 75 191 Antisense
GTGAGCACATTCGTGTGGCTCGGGA 351 483 221 Antisense
GGAGAACACGACAACTCTTTCACCA 668 519 243 Antisense
AACGGTGAAGTGTCCTTGCAAGCCT 133 145 279 Antisense
CCGAGAACACTGATTACACCGCTGG 279 263 326 Antisense
ATCAAGTGTACCAGTCAACCGGCGA 82 27 373 Antisense
AACCGGCGACGTTCATAACCAATTG 612 143 389 Antisense
GGTGGAACACTTCGAGTCCAACTCC 480 497 413 Antisense
TGGTGAGTTTGACTAGCGGGCCTAT 363 553 470 Antisense
Sequence Source Affymetrix Proprietary Database