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[180208_at]

Description T13B5.6 /REP_DB=WormBase Gene ID /WP=CE13613 /TR=O17376 /GB=AAB71290.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 27      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 5.8
(-3)
A 		61.9
(0.6)
A 		12.5
(-2.6)
A 		100
(3)
A 		94
B 8
(3)
A 		7.4
(2.2)
A 		3.5
(-3)
A 		4.3
(-1.9)
A 		5
C 12.5
(-2.2)
A 		44.3
(1.2)
A 		4.5
(-3)
A 		61.4
(3)
A 		57
avr 8.8
(-2.8) 		37.9
(0.9) 		6.8
(-3) 		55.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 5.4
(-3)
A 		5.8
(-3)
A 		5.3
(-3)
A 		8.9
(-2.8)
A 		47.2
(-1.2)
A 		144.5
(3)
A 		139
B 12.8
(-2.7)
A 		46.8
(-1.4)
A 		4.9
(-3)
A 		13.3
(-2.7)
A 		164.8
(3)
P 		96.2
(0.4)
A 		160
C 5.2
(-3)
A 		17.5
(-2.5)
A 		4.7
(-3)
A 		14.1
(-2.6)
A 		83.9
(-0)
A 		163.7
(3)
P 		159
avr 7.8
(-2.9) 		23.4
(-2.1) 		5
(-3) 		12.1
(-2.7) 		98.6
(1.3) 		134.8
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.1
(-3)
A 		13.4
(2.4)
A 		3.3
(-2.4)
A 		14.6
(3)
A 		13
B 2.6
(3)
A 		1.8
(0.3)
A 		0.8
(-3)
A 		0.9
(-2.7)
A 		2
C 4.1
(-1.7)
A 		12.8
(3)
A 		1.6
(-3)
A 		10.3
(1.7)
A 		11
avr 2.9
(-2.2) 		9.3
(3) 		1.9
(-3) 		8.6
(2.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 1
(-3)
A 		2
(-2.8)
A 		1.2
(-3)
A 		2.3
(-2.8)
A 		14.2
(-0.7)
A 		35.2
(3)
A 		34
B 4.4
(-2.7)
A 		15.6
(-1.7)
A 		1.2
(-3)
A 		3.5
(-2.8)
A 		66.9
(3)
P 		35.9
(0.2)
A 		66
C 1.9
(-2.9)
A 		5.3
(-2.5)
A 		1.2
(-3)
A 		2.8
(-2.8)
A 		27.1
(-0.1)
A 		54.8
(3)
P 		54
avr 2.4
(-2.8) 		7.6
(-2.1) 		1.2
(-3) 		2.9
(-2.8) 		36.1
(2.1) 		42
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4523
Sequence Type Exemplar sequence
Representative Public ID T13B5.6 NCBI
Target Description T13B5.6 /REP_DB=WormBase Gene ID /WP=CE13613 /TR=O17376 /GB=AAB71290.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061514 NCBI Caenorhabditis elegans T13B5.6 (T13B5.6) mRNA, complete cds. 11/11 None
SNAP00000003627 ENSEMBL cdna:SNAP chromosome:CEL140:II:1112236:1114232:-1 11/11 None
GENEFINDER00000003633 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1108734:1114232:-1 11/11 None
T13B5.6 ENSEMBL cdna:known chromosome:CEL140:II:1112236:1114232:-1 gene:T13B5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1112234-1114231(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13B5.6
Entrez Gene 188468 Entrez gene
SwissProt O17376 EMBL-EBI
WormBase CE13613 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71290 Hypothetical protein T13B5.6 [Caenorhabditis elegans] ref|NP_493915.1| T13B5.6 [Caenorhabditis elegans] 1.0E-159
blast AAB71289 Hypothetical protein T13B5.5 [Caenorhabditis elegans] ref|NP_493914.1| T13B5.5 [Caenorhabditis elegans] 1.0E-148
blast AAB71290 Hypothetical protein T13B5.6 [Caenorhabditis elegans] ref|NP_493915.1| T13B5.6 [Caenorhabditis elegans] 1.0E-115
blast AAB71289 Hypothetical protein T13B5.5 [Caenorhabditis elegans] ref|NP_493914.1| T13B5.5 [Caenorhabditis elegans] 1.0E-105
blast AAB71292 Hypothetical protein T13B5.7 [Caenorhabditis elegans] ref|NP_493916.1| T13B5.7 [Caenorhabditis elegans] 4.0E-80
blast AAB71292 Hypothetical protein T13B5.7 [Caenorhabditis elegans] ref|NP_493916.1| T13B5.7 [Caenorhabditis elegans] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 8.5E-111
Pfam IPR002918 EMBL-EBI Lipase, class 2 6.4E-76
Pfam IPR002918 EMBL-EBI Lipase, class 2 4.2E-94
Sequence
Target Sequence 
>C. ELEGANS:180208_AT
atcgtacacggcggaggcaacagtgctggctcatttgaaaagtacagagatcacttcata
aaacaaggatatagtaatgaaaccgtctacgcaacatcatggggttttccaacagaaact
attcaacaaagtcttgagatgaagtgtgaatatgtgaaacgaatcagaaaactttttttc
ttagttgcaagttttacggggggtaaggttgatattgtggcgtatggagaaggggcccca
attgcaagaaaagctgtgattggaagaaactgtgtggatacaaatcaagatacgggaaat
tcactgagaaatgaagtcagagcatttgtttctgttagaggacaaaacggaggtattctg
tgcgacccgtcaggtgataaacgtgcaacatgtctaaacatggacatcgggctcaactgt
ggatccaagtttataaaagacataaatgccattggaaagcattggaaagaagctgttcac
tccattcactccattgtcccgcttctcccccaaaaaaccaactgcggctcagattcctgc
ggtattccatactcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTACACGGCGGAGGCAACAGTG 690 35 217 Antisense
GAGGCAACAGTGCTGGCTCATTTGA 613 403 230 Antisense
GTACAGAGATCACTTCATAAAACAA 17 461 258 Antisense
AACCGTCTACGCAACATCATGGGGT 113 147 297 Antisense
GCAACATCATGGGGTTTTCCAACAG 650 317 307 Antisense
TACGGGGGGTAAGGTTGATATTGTG 411 647 411 Antisense
GGCGTATGGAGAAGGGGCCCCAATT 409 539 435 Antisense
AAAGAAGCTGTTCACTCCATTCACT 391 123 682 Antisense
AAAACCAACTGCGGCTCAGATTCCT 456 131 730 Antisense
CTCAGATTCCTGCGGTATTCCATAC 35 229 744 Antisense
TTCCTGCGGTATTCCATACTCGAAA 555 699 750 Antisense
Sequence Source Affymetrix Proprietary Database