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[180205_at]

Description F57A10.2 /REP_DB=WormBase Gene ID /WP=CE16148 /TR=O45592 /GB=CAB09420.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.1
(-3)
A 		3.7
(-2.4)
A 		4.3
(-2.2)
A 		18.9
(3)
A 		17
B 3.3
(-3)
A 		4.5
(-2.3)
A 		7
(-0.9)
A 		13.8
(3)
A 		11
C 18.6
(2.3)
A 		3.9
(-2.7)
A 		3.1
(-3)
A 		20.5
(3)
A 		17
avr 8
(-1.2) 		4
(-3) 		4.8
(-2.6) 		17.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.8
(-3)
A 		5.9
(-1.5)
A 		4.3
(-2.6)
A 		6.6
(-1)
A 		12.1
(3)
A 		11
(2.2)
A 		8
B 2.5
(-2.8)
A 		2.2
(-3)
A 		4.3
(-1.8)
A 		12.6
(3)
A 		12.5
(2.9)
A 		8.2
(0.5)
A 		10
C 3.2
(-2.8)
A 		2.7
(-3)
A 		4.1
(-2.4)
A 		3.3
(-2.8)
A 		17.7
(3)
A 		17
(2.7)
A 		15
avr 3.2
(-3) 		3.6
(-2.8) 		4.2
(-2.4) 		7.5
(-0.6) 		14.1
(3) 		12.1
(1.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.8
(-3)
A 		0.8
(-3)
A 		1.1
(-2.1)
A 		2.8
(3)
A 		2
B 1.1
(-3)
A 		1.1
(-3)
A 		1.6
(-1.3)
A 		2.9
(3)
A 		2
C 6.2
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		3.5
(-0.2)
A 		5
avr 2.7
(1.9) 		1
(-3) 		1.3
(-2.1) 		3.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2.1
(-0.2)
A 		0.9
(-2.6)
A 		1.7
(-1)
A 		3.7
(3)
A 		2.7
(1)
A 		3
B 0.9
(-2.7)
A 		0.7
(-3)
A 		1
(-2.6)
A 		3.3
(0.5)
A 		5.1
(3)
A 		3
(0.1)
A 		4
C 1.2
(-2.4)
A 		0.8
(-2.9)
A 		1
(-2.6)
A 		0.7
(-3)
A 		5.7
(3)
A 		5.7
(3)
A 		5
avr 0.9
(-3) 		1.2
(-2.5) 		1
(-2.8) 		1.9
(-1.5) 		4.8
(3) 		3.8
(1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14767
Sequence Type Exemplar sequence
Representative Public ID F57A10.2 NCBI
Target Description F57A10.2 /REP_DB=WormBase Gene ID /WP=CE16148 /TR=O45592 /GB=CAB09420.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074527 NCBI Caenorhabditis elegans F57A10.2 (F57A10.2) mRNA, complete cds. 11/11 None
SNAP00000005217 ENSEMBL cdna:SNAP chromosome:CEL140:V:15761358:15769769:1 10/11 None
GENEFINDER00000005227 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15769075:15769769:1 11/11 None
F57A10.2 ENSEMBL cdna:known chromosome:CEL140:V:15769159:15769846:1 gene:F57A10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15769158-15769769(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57A10.2
Entrez Gene 180057 Entrez gene
SwissProt O45592 EMBL-EBI
WormBase CE16148 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 1.0E-149
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 1.0E-130
blast CAE66307 Hypothetical protein CBG11557 [Caenorhabditis briggsae] 1.0E-129
blast CAB09420 Hypothetical protein F57A10.2 [Caenorhabditis elegans] ref|NP_506928.1| F57A10.2 [Caenorhabditis elegans] 3.0E-87
blast CAB09420 Hypothetical protein F57A10.2 [Caenorhabditis elegans] ref|NP_506928.1| F57A10.2 [Caenorhabditis elegans] 8.0E-87
blast CAE60147 Hypothetical protein CBG03696 [Caenorhabditis briggsae] 4.0E-49
blast CAE60147 Hypothetical protein CBG03696 [Caenorhabditis briggsae] 1.0E-48
blast CAE71281 Hypothetical protein CBG18166 [Caenorhabditis briggsae] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.9E-22
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.9E-22
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.9E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000005217 5 15-37,49-71,96-118,139-161,202-224
Sequence
Target Sequence 
>C. ELEGANS:180205_AT
aagctggcagcaaagaccttcacaccaagcaccgcagatcttcccttcacagatgcaggt
gcgagcgaagactcgggtatggccaataagcccggtgagcccgctttccagttgtggctc
gacgtgaaaaaggtggtatttccaaccacttcagaaccatcctatgtgaatctccgactt
cacaatccgacagacaagagaatcacattcaaagttcgttgcacttcagcggagctgttc
cgtgttcaaccgccgattgcattcatcaatgccggtgcaactgtcaatcttgtgatgtgg
agcgccaacacccacctgcagccggagaagaagcattatttcgcattttaccacaaaaat
gcgtctccgagtgctcgtcagtctccgccactatggaaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTGGCAGCAAAGACCTTCACAC 158 151 16 Antisense
TCTTCCCTTCACAGATGCAGGTGCG 555 617 54 Antisense
TATGGCCAATAAGCCCGGTGAGCCC 651 649 93 Antisense
TGAGCCCGCTTTCCAGTTGTGGCTC 156 569 111 Antisense
GTATTTCCAACCACTTCAGAACCAT 299 447 151 Antisense
GAACCATCCTATGTGAATCTCCGAC 627 345 169 Antisense
GCACTTCAGCGGAGCTGTTCCGTGT 484 315 236 Antisense
GCCGGTGCAACTGTCAATCTTGTGA 557 283 286 Antisense
TTGTGATGTGGAGCGCCAACACCCA 94 707 305 Antisense
AGCATTATTTCGCATTTTACCACAA 442 77 347 Antisense
TCAGTCTCCGCCACTATGGAAGGAT 411 621 393 Antisense
Sequence Source Affymetrix Proprietary Database