[Home] | [Total List]

[180204_at]

Description F35E12.9 /REP_DB=WormBase Gene ID /WP=CE09924 /TR=O02361 /GB=CAB04276.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 93      6grp_total > 56      4grp_total > 40      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 381.1
(-2.1)
P 		473.2
(1.2)
P 		521.5
(3)
P 		356.7
(-3)
P 		165
B 326.6
(-3)
P 		428.7
(1.6)
P 		461
(3)
P 		433.8
(1.8)
P 		134
C 391.1
(-3)
P 		459
(-0.7)
P 		570
(3)
P 		501.7
(0.7)
P 		179
avr 366.3
(-3) 		453.6
(0.5) 		517.5
(3) 		430.7
(-0.4) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 593
1 2 3 4 5 6 range
A 288.3
(-1.7)
P 		322.9
(-1.2)
P 		470.8
(1)
P 		356.6
(-0.7)
P 		201
(-3)
P 		609
(3)
P 		408
B 365.1
(-1.3)
P 		385.9
(-1.1)
P 		309.9
(-1.9)
P 		316.7
(-1.8)
P 		214.2
(-3)
P 		748.6
(3)
P 		534
C 343.4
(-1.3)
P 		413
(-0.6)
P 		416.7
(-0.6)
P 		316.3
(-1.6)
P 		176.5
(-3)
P 		769
(3)
P 		593
avr 332.3
(-1.4) 		373.9
(-0.9) 		399.1
(-0.6) 		329.9
(-1.4) 		197.2
(-3) 		708.9
(3) 		512
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 138.8
(3)
P 		102.7
(0.5)
P 		136.3
(2.8)
P 		52.2
(-3)
P 		87
B 104.1
(1.9)
P 		105.9
(2.6)
P 		106.8
(3)
P 		92.4
(-3)
P 		14
C 129.5
(-0.6)
P 		132
(-0.5)
P 		198.7
(3)
P 		84.6
(-3)
P 		114
avr 124.1
(1) 		113.5
(0.1) 		147.3
(3) 		76.4
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 53.2
(-3)
P 		114.8
(0.9)
P 		102.5
(0.1)
P 		90.4
(-0.7)
P 		60.7
(-2.5)
P 		148.3
(3)
P 		95
B 127
(-1.5)
P 		128.5
(-1.4)
P 		75.2
(-3)
P 		83.9
(-2.7)
P 		87
(-2.7)
P 		279.2
(3)
P 		204
C 127.3
(-0.9)
P 		126
(-0.9)
P 		106
(-1.5)
P 		63.6
(-2.8)
P 		57.1
(-3)
P 		257.4
(3)
P 		200
avr 102.5
(-1.7) 		123.1
(-0.9) 		94.6
(-2) 		79.3
(-2.6) 		68.3
(-3) 		228.3
(3) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13278
Sequence Type Exemplar sequence
Representative Public ID F35E12.9 NCBI
Target Description F35E12.9 /REP_DB=WormBase Gene ID /WP=CE09924 /TR=O02361 /GB=CAB04276.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028710(11), NM_001028711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028710 NCBI Caenorhabditis elegans F35E12.9a (F35E12.9) mRNA, complete cds. 11/11 None
NM_001028711 NCBI Caenorhabditis elegans F35E12.9b (F35E12.9) mRNA, complete cds. 11/11 None
SNAP00000032235 ENSEMBL cdna:SNAP chromosome:CEL140:V:13745225:13745695:-1 9/11 None
GENEFINDER00000032241 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13744114:13750519:-1 11/11 None
F35E12.9 ENSEMBL cdna:known chromosome:CEL140:V:13743968:13747717:-1 gene:F35E12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13745224-13746877(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35E12.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI91173 Hypothetical protein F35E12.9b [Caenorhabditis elegans] ref|NP_001023882.1| F35E12.9b [Caenorhabditis elegans] 0.0
blast CAB04277 Hypothetical protein F35E12.10 [Caenorhabditis elegans] ref|NP_506404.2| F35E12.10 [Caenorhabditis elegans] 0.0
blast CAB04276 Hypothetical protein F35E12.9a [Caenorhabditis elegans] ref|NP_001023881.1| F35E12.9a [Caenorhabditis elegans] 1.0E-123
blast CAE66251 Hypothetical protein CBG11495 [Caenorhabditis briggsae] 1.0E-123
blast CAI91173 Hypothetical protein F35E12.9b [Caenorhabditis elegans] ref|NP_001023882.1| F35E12.9b [Caenorhabditis elegans] 1.0E-104
blast CAB04276 Hypothetical protein F35E12.9a [Caenorhabditis elegans] ref|NP_001023881.1| F35E12.9a [Caenorhabditis elegans] 1.0E-104
blast CAE66252 Hypothetical protein CBG11496 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 8.0E-5
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.1E-27
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 8.0E-5
Sequence
Target Sequence 
>C. ELEGANS:180204_AT
attttccattaagccttgtcacaggaatttcatattatacaattacgagtgacaacccca
atgagaaggttgttctgtcatatgccatgcgagttggagtgaacgaagacaagctacttg
cgtattattatgtatacgatggtgataatattaataatgcgacaatgattggaaatctgg
ataccattggaggaaaaatcactgtttcttctggaagatcagtgacaatcgtcaattttt
acggcggcacaaaatcaaactcgtacgctcttggaaacgatgcatccactgttcaaggct
atgataaatacacagttttaatgacatcgaaaggaacaaccgcatctggaaatatgactt
ctctggctacaaacggtggtctctatacatttatctgcgtcgattgctcaacattttact
acacacaactccgttttgacagtatgacgccggtttccaaccgtgcatatgtcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCCATTAAGCCTTGTCACAGG 272 13 323 Antisense
AAGGTTGTTCTGTCATATGCCATGC 52 161 388 Antisense
AATCGTCAATTTTTACGGCGGCACA 76 167 549 Antisense
AAATCAAACTCGTACGCTCTTGGAA 418 115 574 Antisense
ACGATGCATCCACTGTTCAAGGCTA 438 93 599 Antisense
TGACTTCTCTGGCTACAAACGGTGG 30 567 677 Antisense
GGTCTCTATACATTTATCTGCGTCG 519 503 700 Antisense
ATCTGCGTCGATTGCTCAACATTTT 683 33 715 Antisense
ACTACACACAACTCCGTTTTGACAG 618 99 740 Antisense
TGACAGTATGACGCCGGTTTCCAAC 251 571 759 Antisense
GGTTTCCAACCGTGCATATGTCACA 86 507 774 Antisense
Sequence Source Affymetrix Proprietary Database