[Home] | [Total List]

[180203_at]

Description C49C8.6 /REP_DB=WormBase Gene ID /WP=CE08841 /TR=Q18708 /GB=AAB03129.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 27.8
(-3)
A 		48
(-0.4)
P 		34
(-2.2)
P 		74.1
(3)
P 		46
B 32.3
(3)
A 		29.8
(1.8)
A 		19.3
(-3)
A 		28.6
(1.3)
A 		13
C 37.8
(0.3)
M 		39.2
(0.6)
A 		20
(-3)
A 		52.4
(3)
P 		32
avr 32.6
(-1.2) 		39
(0.2) 		24.4
(-3) 		51.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 28.1
(-1.1)
A 		16.7
(-3)
A 		17.2
(-2.9)
A 		47
(2.1)
P 		52.1
(3)
P 		46.4
(2)
P 		35
B 22.9
(-2.4)
A 		19.7
(-3)
A 		33.2
(-0.3)
P 		27.2
(-1.5)
A 		49.5
(3)
P 		36
(0.3)
P 		30
C 3.8
(-3)
A 		44.7
(0.3)
P 		4.6
(-2.9)
A 		77.3
(3)
P 		30.4
(-0.8)
P 		26.3
(-1.2)
P 		74
avr 18.3
(-3) 		27
(-1.4) 		18.3
(-3) 		50.5
(3) 		44
(1.8) 		36.2
(0.3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 10.1
(0.8)
A 		10.4
(1.7)
P 		8.9
(-3)
P 		10.8
(3)
P 		2
B 10.3
(3)
A 		7.4
(0)
A 		4.5
(-3)
A 		6.1
(-1.3)
A 		6
C 12.5
(3)
M 		11.3
(1.7)
A 		7
(-3)
A 		8.8
(-1)
P 		6
avr 11
(3) 		9.7
(1.1) 		6.8
(-3) 		8.6
(-0.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.2
(-2.3)
A 		5.9
(-1.9)
A 		3.8
(-3)
A 		11.9
(1.1)
P 		15.7
(3)
P 		11.3
(0.8)
P 		12
B 8
(-2.4)
A 		6.6
(-3)
A 		8.1
(-2.3)
P 		7.2
(-2.7)
A 		20.1
(3)
P 		13.4
(0)
P 		14
C 1.4
(-2.9)
A 		13.7
(2.2)
P 		1.2
(-3)
A 		15.6
(3)
P 		9.8
(0.6)
P 		8.8
(0.2)
P 		14
avr 4.9
(-2.7) 		8.7
(-0.6) 		4.4
(-3) 		11.6
(1) 		15.2
(3) 		11.2
(0.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8441
Sequence Type Exemplar sequence
Representative Public ID C49C8.6 NCBI
Target Description C49C8.6 /REP_DB=WormBase Gene ID /WP=CE08841 /TR=Q18708 /GB=AAB03129.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069083 NCBI Caenorhabditis elegans C49C8.6 (C49C8.6) mRNA, complete cds. 11/11 None
C49C8.6 ENSEMBL cdna:known chromosome:CEL140:IV:8657437:8658166:-1 gene:C49C8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039876 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8657442-8658172(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49C8.6
Entrez Gene 183603 Entrez gene
SwissProt Q18708 EMBL-EBI
WormBase CE35963 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03129 Hypothetical protein C49C8.6 [Caenorhabditis elegans] ref|NP_501484.2| C49C8.6 [Caenorhabditis elegans] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:180203_AT
ggttcatttcaacatttctggttattttctttctggataaactcatttgtgcaccagatg
attgttccattgaaacttgtaaagcatgggaaccacgttatttgtataatttcggagaag
caattattgaatatacatcatcttgcaaagaatcaagaatttattgcattccgaatcctt
atttaaactgtgaaactgttcaagttgttggaaaacagaatgaaaataaccgtaccggta
aaatagactctgatagcaatcacaatgccactgctattttcaaatgtaacaagaatcatt
ggaaaatcggtgaacaaatcattgaagagattggatgtaatttccattgtactgagaatg
tgaaatctcgtaaaattgaagaatctcagttgtcaaaaaataccaaaatagacttccgta
ctcaaccaaacatcaccctgaacattcgggaattgggatctgaagtcgaaaatcgtacga
aaactccaaataatcaattccaactgaaccaaaatgtcgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCATTTCAACATTTCTGGTTAT 55 507 26 Antisense
TTCTGGTTATTTTCTTTCTGGATAA 583 693 41 Antisense
GGATAAACTCATTTGTGCACCAGAT 578 509 60 Antisense
GCACCAGATGATTGTTCCATTGAAA 287 315 76 Antisense
GCATGGGAACCACGTTATTTGTATA 302 301 109 Antisense
TTGCATTCCGAATCCTTATTTAAAC 281 687 189 Antisense
GCAATCACAATGCCACTGCTATTTT 201 323 281 Antisense
GGATGTAATTTCCATTGTACTGAGA 626 513 358 Antisense
TAGACTTCCGTACTCAACCAAACAT 635 651 434 Antisense
ACCAAACATCACCCTGAACATTCGG 218 85 450 Antisense
TTCCAACTGAACCAAAATGTCGCTC 600 693 523 Antisense
Sequence Source Affymetrix Proprietary Database