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[180202_at]

Description T05A7.1 /REP_DB=WormBase Gene ID /WP=CE04888 /TR=Q22207 /GB=AAA81119.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 95      6grp_total > 67      4grp_total > 17      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 859
1 2 3 4 range
A 299.2
(-3)
P 		660.3
(-0.5)
P 		566.4
(-1.1)
P 		1158
(3)
P 		859
B 337.4
(-3)
P 		496.3
(-1.7)
P 		475.1
(-1.9)
P 		1083.5
(3)
P 		746
C 393.3
(-3)
P 		534.5
(-1.8)
P 		582.6
(-1.5)
P 		1127.3
(3)
P 		734
avr 343.3
(-3) 		563.7
(-1.3) 		541.4
(-1.5) 		1122.9
(3) 		780

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1312
1 2 3 4 5 6 range
A 498.7
(-2.7)
P 		643.1
(-1.8)
P 		557.1
(-2.3)
P 		436.5
(-3)
P 		671.6
(-1.7)
P 		1504.4
(3)
P 		1068
B 457.2
(-2.5)
P 		678.2
(-1.4)
P 		532.8
(-2.1)
P 		350.5
(-3)
P 		690
(-1.4)
P 		1605.8
(3)
P 		1255
C 418.6
(-3)
P 		649.1
(-1.9)
P 		429.3
(-2.9)
P 		516.3
(-2.5)
P 		624.5
(-2)
P 		1662.5
(3)
P 		1244
avr 458.2
(-2.9) 		656.8
(-1.8) 		506.4
(-2.6) 		434.4
(-3) 		662
(-1.8) 		1590.9
(3) 		1157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 109
(-3)
P 		143.3
(0.4)
P 		148.1
(0.9)
P 		169.5
(3)
P 		61
B 107.6
(-3)
P 		122.6
(-2.3)
P 		110.1
(-2.9)
P 		230.9
(3)
P 		123
C 130.2
(-3)
P 		153.7
(-1.1)
P 		203
(3)
P 		190.1
(1.9)
P 		73
avr 115.6
(-3) 		139.9
(-1.2) 		153.7
(-0.2) 		196.8
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 91.9
(-3)
P 		228.7
(-0)
P 		121.3
(-2.4)
P 		110.7
(-2.6)
P 		202.7
(-0.6)
P 		366.3
(3)
P 		274
B 159.1
(-2.2)
P 		225.8
(-1.4)
P 		129.4
(-2.6)
P 		92.8
(-3)
P 		280.3
(-0.8)
P 		598.8
(3)
P 		506
C 155.2
(-2.3)
P 		198.1
(-1.8)
P 		109.3
(-2.9)
P 		103.8
(-3)
P 		202.1
(-1.7)
P 		556.5
(3)
P 		453
avr 135.4
(-2.5) 		217.5
(-1.3) 		120
(-2.7) 		102.4
(-3) 		228.4
(-1.1) 		507.2
(3) 		405
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4169
Sequence Type Exemplar sequence
Representative Public ID T05A7.1 NCBI
Target Description T05A7.1 /REP_DB=WormBase Gene ID /WP=CE04888 /TR=Q22207 /GB=AAA81119.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062427 NCBI Caenorhabditis elegans T05A7.1 (T05A7.1) mRNA, complete cds. 11/11 None
SNAP00000043919 ENSEMBL cdna:SNAP chromosome:CEL140:II:4678205:4679515:1 11/11 None
GENEFINDER00000043927 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4678205:4679515:1 11/11 None
T05A7.1 ENSEMBL cdna:known chromosome:CEL140:II:4678013:4679515:1 gene:T05A7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4678011-4679514(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A7.1
Entrez Gene 188081 Entrez gene
SwissProt Q22207 EMBL-EBI
WormBase CE04888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494828 T05A7.1 [Caenorhabditis elegans] gb|AAA81119.1| Hypothetical protein T05A7.1 [Caenorhabditis elegans] 1.0E-125
blast NP_494828 T05A7.1 [Caenorhabditis elegans] gb|AAA81119.1| Hypothetical protein T05A7.1 [Caenorhabditis elegans] 1.0E-111
blast CAE67840 Hypothetical protein CBG13426 [Caenorhabditis briggsae] 1.0E-101
blast CAE67834 Hypothetical protein CBG13418 [Caenorhabditis briggsae] 2.0E-88
Sequence
Target Sequence 
>C. ELEGANS:180202_AT
atggaaacgaaactctcccagtggaaattcgaaatatccgaatccatgtctacgatcatg
atatgaagccgtcgtgttacaagcgaaaagtgaatgtggtgatgccaggatggtttgtga
tcaagagtggagaagtagatacatctcgagatttcgatgttgtcaaagacggagcagtgt
ctgtcagtgtcgcgttggatggtgatcatatttgtttgaacggacattcagatatgttca
ttgttcccgagtcgttgtgcaacttcgagatgagctcatttttcccggtggatatttgta
aaacacttcaacaaaaaggacttcatacattgaaagagctcgagacaaaaaatgcattca
atgccacgttggaacttcctgcgtctccaagcttcttaggaatctcattgttagatgtga
tgaagggcaactatcgaatcaaaatctctatcgcatccgagggcaagaaaatcgttgaat
ttgcccttccaacgggttacacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAAACGAAACTCTCCCAGTGGA 245 53 197 Antisense
ATATCCGAATCCATGTCTACGATCA 348 21 230 Antisense
GATATGAAGCCGTCGTGTTACAAGC 84 425 256 Antisense
CGGAGCAGTGTCTGTCAGTGTCGCG 471 243 366 Antisense
CAGTGTCGCGTTGGATGGTGATCAT 178 209 381 Antisense
TGTTCCCGAGTCGTTGTGCAACTTC 180 563 438 Antisense
TGAGCTCATTTTTCCCGGTGGATAT 205 569 467 Antisense
ATTCAATGCCACGTTGGAACTTCCT 4 13 552 Antisense
CTGCGTCTCCAAGCTTCTTAGGAAT 375 237 575 Antisense
GAATCAAAATCTCTATCGCATCCGA 300 327 632 Antisense
TTTGCCCTTCCAACGGGTTACACAG 658 667 676 Antisense
Sequence Source Affymetrix Proprietary Database