[Home] | [Total List]

[180201_at] 7TM chemoreceptor, sre family

Description T05A7.8 /REP_DB=WormBase Gene ID /WP=CE20033 /TR=Q22209 /GB=AAA81121.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 03      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 53.6
(-3)
P 		55.2
(-2.9)
M 		66.2
(-2.3)
A 		161.7
(3)
P 		108
B 48.3
(-2.4)
P 		53.8
(-1)
A 		45.7
(-3)
A 		69.7
(3)
P 		24
C 83.3
(0.3)
P 		57.4
(-2)
A 		46.2
(-3)
A 		114.1
(3)
P 		68
avr 61.7
(-2.1) 		55.5
(-2.7) 		52.7
(-3) 		115.2
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 79
(3)
A 		38.3
(-1.4)
A 		64.9
(1.5)
P 		23.2
(-3)
A 		35.9
(-1.6)
A 		25.6
(-2.7)
A 		56
B 58.8
(2.4)
P 		33
(-3)
A 		61.6
(3)
A 		41.3
(-1.3)
A 		50.2
(0.6)
A 		50.6
(0.7)
P 		29
C 40.2
(-0.9)
A 		65.2
(2.2)
P 		45.9
(-0.2)
A 		69.1
(2.7)
A 		23.9
(-3)
A 		71.2
(3)
P 		47
avr 59.3
(3) 		45.5
(-0.7) 		57.5
(2.5) 		44.5
(-0.9) 		36.7
(-3) 		49.1
(0.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.5
(0.8)
P 		12
(-3)
M 		17.3
(-0.3)
A 		23.7
(3)
P 		12
B 15.4
(3)
P 		13.3
(0.4)
A 		10.6
(-3)
A 		14.8
(2.3)
P 		5
C 27.6
(3)
P 		16.5
(-2.8)
A 		16.1
(-3)
A 		19.2
(-1.4)
P 		12
avr 20.8
(3) 		13.9
(-3) 		14.7
(-2.3) 		19.2
(1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 14.6
(3)
A 		13.6
(2.3)
A 		14.1
(2.7)
P 		5.9
(-3)
A 		10.8
(0.4)
A 		6.2
(-2.8)
A 		9
B 20.5
(3)
P 		11
(-2.9)
A 		14.9
(-0.5)
A 		10.9
(-3)
A 		20.4
(2.9)
A 		18.9
(2)
P 		10
C 14.9
(-0.3)
A 		19.9
(1.5)
P 		11.7
(-1.5)
A 		13.9
(-0.7)
A 		7.7
(-3)
A 		23.8
(3)
P 		16
avr 16.7
(3) 		14.8
(1.2) 		13.6
(0.1) 		10.2
(-3) 		13
(-0.4) 		16.3
(2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4544
Sequence Type Exemplar sequence
Representative Public ID T05A7.8 NCBI
Target Description T05A7.8 /REP_DB=WormBase Gene ID /WP=CE20033 /TR=Q22209 /GB=AAA81121.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062429 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-40) (sre-40) mRNA, complete cds. 11/11 None
GENEFINDER00000043930 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4679737:4683047:-1 11/11 None
T05A7.8 ENSEMBL cdna:known chromosome:CEL140:II:4681751:4683715:-1 gene:T05A7.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043921 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4681660-4683714(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-40
Ensembl T05A7.8
Entrez Gene 188086 Entrez gene
SwissProt Q22209 EMBL-EBI
WormBase CE38099 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494830 Serpentine Receptor, class E (epsilon) family member (sre-40) [Caenorhabditis elegans] gb|AAA81121.3| Serpentine receptor, class e (epsilon) protein 40 [Caenorhabditis elegans] 0.0
blast NP_494830 Serpentine Receptor, class E (epsilon) family member (sre-40) [Caenorhabditis elegans] gb|AAA81121.3| Serpentine receptor, class e (epsilon) protein 40 [Caenorhabditis elegans] 1.0E-141
blast NP_494829 Serpentine Receptor, class E (epsilon) family member (sre-39) [Caenorhabditis elegans] gb|AAA81120.1| Serpentine receptor, class e (epsilon) protein 39 [Caenorhabditis elegans] 2.0E-82
blast CAE67826 Hypothetical protein CBG13409 [Caenorhabditis briggsae] 2.0E-59
blast CAE67826 Hypothetical protein CBG13409 [Caenorhabditis briggsae] 7.0E-55
blast NP_494832 F10G7.7 [Caenorhabditis elegans] gb|AAA81123.3| Hypothetical protein F10G7.7 [Caenorhabditis elegans] 4.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-14
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 2.7E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494830.2 7 29-51,64-86,127-149,170-192,197-219,256-278,288-310
T05A7.8 7 29-51,64-86,127-149,170-192,197-219,256-278,288-310
GENEFINDER00000043930 6 15-37,58-80,85-107,142-164,174-196,303-325
Sequence
Target Sequence 
>C. ELEGANS:180201_AT
cgccccggagtctacatatttgcaatagtattcatacaaaccttcactgccttagttgca
tattcagcctggaacctatggttaagtgtttacatttggcttctcaccggaattcttctt
ctaattgttaactttggattattcggttatatttggtactggaatattcgtgttcatcga
atccacgataattcaattatgacccagtcaaagtacacactacaggctagatttcaggca
agagaaaatgcaagggggttagaatttacaaggcttgccgtcattgtaataacaatggcg
ttgcttttcgagtgcacaatatttgttctgcaatattataacttctttcaagaatatgaa
atatttttatactatgctatagattgggttaacgcgggaaacaccgtggcaatagtcccg
ttgacagtcgcattggagccggtgtggaggagaaaattctttgggaatattaggcattcg
tgtcctaaaacttcaaagtcatctgccattgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCCGGAGTCTACATATTTGCAA 107 257 514 Antisense
TCATACAAACCTTCACTGCCTTAGT 194 621 545 Antisense
GCCTTAGTTGCATATTCAGCCTGGA 225 281 562 Antisense
AGTGTTTACATTTGGCTTCTCACCG 615 57 598 Antisense
TTCTCACCGGAATTCTTCTTCTAAT 641 691 614 Antisense
AAGGCTTGCCGTCATTGTAATAACA 192 161 783 Antisense
GGAAACACCGTGGCAATAGTCCCGT 447 527 910 Antisense
TAGTCCCGTTGACAGTCGCATTGGA 254 649 926 Antisense
GTCGCATTGGAGCCGGTGTGGAGGA 448 475 940 Antisense
GGCATTCGTGTCCTAAAACTTCAAA 101 537 986 Antisense
AACTTCAAAGTCATCTGCCATTGTT 507 139 1002 Antisense
Sequence Source Affymetrix Proprietary Database