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[180200_at]

Description T13C2.2 /REP_DB=WormBase Gene ID /WP=CE04938 /TR=Q22455 /GB=AAA81136.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 90      6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 72.2
(-2.9)
P 		273.4
(2)
P 		315.2
(3)
P 		68.1
(-3)
P 		247
B 67.8
(-3)
P 		331.1
(3)
P 		230.1
(0.7)
P 		102.7
(-2.2)
P 		263
C 92.2
(-3)
P 		251.7
(1.6)
P 		301.4
(3)
P 		104.7
(-2.6)
P 		209
avr 77.4
(-3) 		285.4
(3) 		282.2
(2.9) 		91.8
(-2.6) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 131.5
(-3)
P 		220.6
(2.1)
P 		139.7
(-2.5)
P 		236.1
(3)
P 		190.2
(0.4)
P 		147.9
(-2.1)
P 		105
B 138
(-0.8)
P 		184
(1.2)
P 		87.8
(-3)
P 		152.7
(-0.2)
P 		226.7
(3)
P 		141.4
(-0.7)
P 		139
C 105.7
(-3)
P 		214.6
(2.3)
P 		138
(-1.4)
P 		194
(1.3)
P 		229.7
(3)
P 		164.4
(-0.2)
P 		124
avr 125.1
(-2.8) 		206.4
(2.4) 		121.8
(-3) 		194.3
(1.6) 		215.5
(3) 		151.2
(-1.1) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 26.3
(-1.6)
P 		59.4
(1.1)
P 		82.4
(3)
P 		10
(-3)
P 		72
B 21.6
(-3)
P 		81.8
(3)
P 		53.3
(0.2)
P 		21.9
(-3)
P 		60
C 30.5
(-2.1)
P 		72.4
(0.8)
P 		105
(3)
P 		17.6
(-3)
P 		87
avr 26.1
(-2.1) 		71.2
(2.2) 		80.2
(3) 		16.5
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 24.2
(-3)
P 		78.4
(3)
P 		30.4
(-2.3)
P 		59.9
(1)
P 		57.4
(0.7)
P 		36
(-1.7)
P 		54
B 48
(-0.7)
P 		61.2
(0.4)
P 		21.3
(-3)
P 		40.4
(-1.4)
P 		92.1
(3)
P 		52.7
(-0.3)
P 		71
C 39.2
(-2.4)
P 		65.5
(1.7)
P 		35.1
(-3)
P 		39
(-2.4)
P 		74.3
(3)
P 		55
(0)
P 		39
avr 37.1
(-1.9) 		68.4
(2.2) 		28.9
(-3) 		46.4
(-0.7) 		74.6
(3) 		47.9
(-0.5) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4155
Sequence Type Exemplar sequence
Representative Public ID T13C2.2 NCBI
Target Description T13C2.2 /REP_DB=WormBase Gene ID /WP=CE04938 /TR=Q22455 /GB=AAA81136.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062988 NCBI Caenorhabditis elegans T13C2.2 (T13C2.2) mRNA, complete cds. 11/11 None
SNAP00000037674 ENSEMBL cdna:SNAP chromosome:CEL140:II:6789213:6793729:1 11/11 None
GENEFINDER00000037681 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6789213:6793729:1 11/11 None
T13C2.2 ENSEMBL cdna:known chromosome:CEL140:II:6792161:6799195:1 gene:T13C2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6792553-6793724(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13C2.2
Entrez Gene 188470 Entrez gene
SwissProt Q6AHP7 EMBL-EBI
WormBase CE37046 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81189 Hypothetical protein T13C2.2 [Caenorhabditis elegans] ref|NP_495389.2| T13C2.2 [Caenorhabditis elegans] 0.0
blast CAE65971 Hypothetical protein CBG11155 [Caenorhabditis briggsae] 0.0
blast AAR12976 Hypothetical protein T13C2.3b [Caenorhabditis elegans] ref|NP_001022344.1| T13C2.3b [Caenorhabditis elegans] 0.0
blast AAR12976 Hypothetical protein T13C2.3b [Caenorhabditis elegans] ref|NP_001022344.1| T13C2.3b [Caenorhabditis elegans] 1.0E-178
blast T16862 hypothetical protein T13C2.2 - Caenorhabditis elegans 1.0E-159
Sequence
Target Sequence 
>C. ELEGANS:180200_AT
tcttccctcgtcttatcaacgacaaattcttgaaattttaaaagaaactcctccgaaact
cgatggtgccacttttgagaaacctgaaaaacctattgaggtaacctcactgccaccatc
atttgcaattccaaaaaatacggaatcaaatgaaaaccagagaatgttcatggttcctga
aagacaagaatttccagaagaagatcatcattttgagcagaaactcacatttccaaaaga
acaactaatggttccacgtgtcaatatgccatttcaatcacaggagaaacgaattcaaat
ccatcctcaatcaataagtggctcacaacaaaatgttcttttccctgatctaccaccaac
cagacctattgaaccaaccgtcagtaaccaagcatctggactacggggcctgctagaaaa
tccaaatttcgacagcctaataagctcaattgttcaaaaaggtgcaaagattgcagaagg
acctctaccacaaacggttggagccgttgatcatacaaaactctcatctagtgagatggg
aattttgagtcctgcaatgtggtcagacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCCTCGTCTTATCAACGACAA 707 617 249 Antisense
GAAACTCCTCCGAAACTCGATGGTG 17 357 292 Antisense
CTCACTGCCACCATCATTTGCAATT 88 229 354 Antisense
TAATGGTTCCACGTGTCAATATGCC 297 637 494 Antisense
AACGAATTCAAATCCATCCTCAATC 530 145 536 Antisense
ACAAAATGTTCTTTTCCCTGATCTA 128 113 576 Antisense
TCTACCACCAACCAGACCTATTGAA 560 613 597 Antisense
ACCAACCGTCAGTAACCAAGCATCT 214 85 621 Antisense
GACTACGGGGCCTGCTAGAAAATCC 622 367 647 Antisense
GGACCTCTACCACAAACGGTTGGAG 668 451 727 Antisense
GAGTCCTGCAATGTGGTCAGACGCA 517 399 795 Antisense
Sequence Source Affymetrix Proprietary Database