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[180199_s_at]

Description Y41E3.16 /REP_DB=WormBase Gene ID /WP=CE24267 /TR=Q9U2H3 /GB=CAB54437.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 99.7
(2.6)
A 		45.9
(-3)
A 		67.8
(-0.7)
A 		103.3
(3)
P 		57
B 88.9
(-0.6)
A 		99.3
(1.2)
A 		109.8
(3)
A 		74.7
(-3)
A 		35
C 131.7
(3)
A 		73.1
(-1.1)
A 		45.2
(-3)
A 		72.3
(-1.1)
A 		87
avr 106.8
(3) 		72.8
(-3) 		74.3
(-2.7) 		83.4
(-1.1) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 10.8
(-3)
A 		85.9
(3)
A 		40.3
(-0.6)
A 		51.3
(0.2)
A 		60.9
(1)
A 		51.8
(0.3)
A 		75
B 73.7
(1.9)
A 		24.1
(-3)
A 		44
(-1)
A 		56.7
(0.2)
A 		85
(3)
A 		31.5
(-2.3)
A 		61
C 71.8
(3)
A 		69.8
(2.8)
A 		52.5
(0.9)
A 		21.9
(-2.5)
A 		16.9
(-3)
A 		48.6
(0.5)
A 		55
avr 52.1
(0.2) 		59.9
(3) 		45.6
(-2.2) 		43.3
(-3) 		54.3
(1) 		44
(-2.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 36.3
(3)
A 		10
(-3)
A 		17.7
(-1.2)
A 		15.1
(-1.8)
P 		26
B 28.3
(3)
A 		24.5
(1.2)
A 		25.4
(1.6)
A 		15.9
(-3)
A 		12
C 43.6
(3)
A 		21
(-1.3)
A 		15.8
(-2.3)
A 		12.2
(-3)
A 		31
avr 36.1
(3) 		18.5
(-1.9) 		19.6
(-1.6) 		14.4
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2
(-3)
A 		30.6
(3)
A 		8.8
(-1.6)
A 		13
(-0.7)
A 		18.4
(0.4)
A 		12.6
(-0.8)
A 		29
B 25.7
(1)
A 		8
(-3)
A 		10.7
(-2.4)
A 		15
(-1.4)
A 		34.5
(3)
A 		11.7
(-2.2)
A 		27
C 26.6
(3)
A 		21.3
(1.6)
A 		13.4
(-0.6)
A 		4.4
(-3)
A 		5.5
(-2.7)
A 		16.3
(0.2)
A 		22
avr 18.1
(1.8) 		20
(3) 		11
(-2.9) 		10.8
(-3) 		19.5
(2.7) 		13.5
(-1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180199_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8986
Sequence Type Exemplar sequence
Representative Public ID Y41E3.16 NCBI
Target Description Y41E3.16 /REP_DB=WormBase Gene ID /WP=CE24267 /TR=Q9U2H3 /GB=CAB54437.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070416(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070416 NCBI Caenorhabditis elegans Y41E3.16 (Y41E3.16) mRNA, complete cds. 11/11 None
Y41E3.16 ENSEMBL cdna:known chromosome:CEL140:IV:15040037:15042355:1 gene:Y41E3.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001446 4/11 Cross Hyb Matching Probes None
GENEFINDER00000001472 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15040042-15042361(+) 95.19 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41E3.16
Entrez Gene 178420 Entrez gene
SwissProt Q9U2H3 EMBL-EBI
WormBase CE24267 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54437 Hypothetical protein Y41E3.16 [Caenorhabditis elegans] ref|NP_502817.1| Y41E3.16 [Caenorhabditis elegans] 0.0
blast CAE56115 Hypothetical protein CBG23721 [Caenorhabditis briggsae] 9.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR003034 EMBL-EBI DNA-binding SAP 5.8E-8
Sequence
Target Sequence 
>C. ELEGANS:180199_S_AT
ggtggaggtgtcccaatgattccgatggttccaatgccacctggaatgatcgggcttcca
ccaggccctccaggccgaagacgtaaatcgagattcgatcagccaccaccggaggctgcc
gcggctgcacaacaattttatgcgagcacggtaagcgttttaatcgccgcgaaattgcag
attttagatattctaaaggtaggctttttgctgttaaaacggtttcagcgagcccacccg
gtcgagcatcaaatttggcgtcggatcctcactgtctattattccattctttttcggaaa
cacacaacgtcttttttaaaaaataaaataattttttcgactaggatagttatatcctcc
cccaccatctatttctttttctctgaattctgtttgctgaaacgtacggattatcgaatt
ccgttgaatctacattatgtttcccaatttttcacgttttcaggatttttcggcagtttt
tcgaaaaaaaaacaaagtttctcagttacttcgcaagcctcgcacgtagaaaatcgtgcc
agacttgcgaaaaaagtgtgcggcggttgcgaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGAGGTGTCCCAATGATTCCGA 151 499 1558 Antisense
TGATTCCGATGGTTCCAATGCCACC 614 563 1574 Antisense
ATGCCACCTGGAATGATCGGGCTTC 260 41 1591 Antisense
TGCCGCGGCTGCACAACAATTTTAT 559 585 1674 Antisense
TCAAATTTGGCGTCGGATCCTCACT 554 627 1806 Antisense
GATCCTCACTGTCTATTATTCCATT 705 365 1821 Antisense
TAGGATAGTTATATCCTCCCCCACC 192 655 1899 Antisense
TTTTTCTCTGAATTCTGTTTGCTGA 303 675 1933 Antisense
AGTTTCTCAGTTACTTCGCAAGCCT 429 63 2053 Antisense
TCGCAAGCCTCGCACGTAGAAAATC 332 597 2068 Antisense
AAAAGTGTGCGGCGGTTGCGAATCG 496 131 2109 Antisense
Sequence Source Affymetrix Proprietary Database