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[180198_at]

Description F41F3.5 /REP_DB=WormBase Gene ID /WP=CE07219 /TR=Q20284 /GB=AAA97984.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 05      6grp_total > 22      4grp_total > 02      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 44.2
(-2.4)
A 		32.2
(-3)
P 		61.3
(-1.6)
P 		155.5
(3)
P 		123
B 51.3
(3)
M 		47.6
(2.2)
P 		47.1
(2.1)
P 		23.1
(-3)
A 		28
C 60.2
(-0.8)
P 		77.7
(1.2)
P 		39.7
(-3)
P 		94.4
(3)
P 		55
avr 51.9
(-2.6) 		52.5
(-2.6) 		49.4
(-3) 		91
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 83
(3)
P 		48.1
(0.2)
M 		66.6
(1.7)
P 		22.2
(-1.8)
A 		35.5
(-0.8)
A 		7.2
(-3)
A 		76
B 37.8
(-1.3)
P 		60.1
(3)
M 		39.3
(-1)
M 		35.1
(-1.8)
A 		30.9
(-2.7)
A 		29.1
(-3)
A 		31
C 17.3
(-3)
A 		45.9
(2.5)
P 		32.9
(-0)
A 		40.5
(1.4)
A 		48.7
(3)
P 		27
(-1.1)
A 		31
avr 46
(1.9) 		51.4
(3) 		46.3
(2) 		32.6
(-0.7) 		38.4
(0.4) 		21.1
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16.1
(0.5)
A 		7
(-3)
P 		16
(0.4)
P 		22.8
(3)
P 		16
B 16.4
(3)
M 		11.8
(0.6)
P 		10.9
(0.1)
P 		4.9
(-3)
A 		12
C 19.9
(1.3)
P 		22.3
(3)
P 		13.8
(-3)
P 		15.9
(-1.5)
P 		9
avr 17.5
(3) 		13.7
(-2.8) 		13.6
(-3) 		14.5
(-1.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 15.3
(2.3)
P 		17.1
(3)
M 		14.5
(2)
P 		5.6
(-1.5)
A 		10.7
(0.5)
A 		1.8
(-3)
A 		15
B 13.1
(-0.9)
P 		20
(3)
M 		9.5
(-2.9)
M 		9.3
(-3)
A 		12.6
(-1.1)
A 		10.8
(-2.2)
A 		11
C 6.4
(-3)
A 		14
(1.9)
P 		8.4
(-1.7)
A 		8.2
(-1.9)
A 		15.8
(3)
P 		9
(-1.3)
A 		9
avr 11.6
(-0.3) 		17
(3) 		10.8
(-0.8) 		7.7
(-2.7) 		13
(0.6) 		7.2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14843
Sequence Type Exemplar sequence
Representative Public ID F41F3.5 NCBI
Target Description F41F3.5 /REP_DB=WormBase Gene ID /WP=CE07219 /TR=Q20284 /GB=AAA97984.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F41F3.5 ENSEMBL cdna:known chromosome:CEL140:V:4656565:4657626:-1 gene:F41F3.5 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4656564-4657626(-) 85.62 100.0
Public Domain and Genome References
Ensembl F41F3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T29733 hypothetical protein F41F3.5 - Caenorhabditis elegans 2.0E-37
blast CAE64163 Hypothetical protein CBG08784 [Caenorhabditis briggsae] 6.0E-13
blast CAE64162 Hypothetical protein CBG08782 [Caenorhabditis briggsae] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.1E-19
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.9E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
F41F3.5 3 7-29,49-71,109-131
Sequence
Target Sequence 
>C. ELEGANS:180198_AT
atgctggttcttgagtttttacttctatattttccagtatatgttttatctagtaaagtt
tatcccgatattgttacaagtgtaattaacaccttcaccatcaattcatatcttgttaac
caacttcaaacagttgcaattgcattgaatcgatttattgcattatttgcaccattacga
tataatactttgtgcagtaaccaagtcgcatgggtaaccatgcaacattatgcaatatca
aaaactcaaaacacaattttccatcaaactacagtaatctcacagtaccaccaaactaca
gtaatcctacagtaccaccaaattacagtagtcctagtaaaacataccaaaaaaatttta
aacattttcagccaacagttgccttattcgcttgaacatcggaacatttgcacatatgtt
gagcaaaattacagtaaaattgttccagtcggctcggatcttattgtttttatgccgttt
atgttcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTGGTTCTTGAGTTTTTACTTC 220 41 172 Antisense
ACACCTTCACCATCAATTCATATCT 695 109 260 Antisense
GTAACCAAGTCGCATGGGTAACCAT 261 463 368 Antisense
GTAATCTCACAGTACCACCAAACTA 346 463 445 Antisense
GTACCACCAAATTACAGTAGTCCTA 661 457 483 Antisense
AACATTTTCAGCCAACAGTTGCCTT 558 137 532 Antisense
CAGTTGCCTTATTCGCTTGAACATC 390 207 547 Antisense
GCTTGAACATCGGAACATTTGCACA 396 307 561 Antisense
AAATTGTTCCAGTCGGCTCGGATCT 528 115 608 Antisense
GGCTCGGATCTTATTGTTTTTATGC 355 537 622 Antisense
TGTTTTTATGCCGTTTATGTTCTTG 489 561 636 Antisense
Sequence Source Affymetrix Proprietary Database