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[180197_at]

Description F07E5.1 /REP_DB=WormBase Gene ID /WP=CE09214 /TR=P91225 /GB=AAB37901.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 39      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 104.8
(3)
A 		12.8
(-3)
A 		64.4
(0.4)
A 		84.5
(1.7)
A 		92
B 54.8
(0.1)
A 		72.3
(3)
A 		62.7
(1.4)
A 		36.5
(-3)
A 		36
C 85.7
(3)
A 		61.8
(-0.7)
A 		47.4
(-3)
A 		62.1
(-0.7)
A 		38
avr 81.8
(3) 		49
(-3) 		58.2
(-1.3) 		61
(-0.8) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 38.8
(-0.9)
A 		68.2
(1.6)
A 		60
(0.9)
A 		14.3
(-3)
A 		49.5
(0)
A 		84.1
(3)
A 		70
B 44
(2.9)
A 		43.3
(2.8)
A 		44.4
(3)
A 		9.7
(-3)
A 		38.5
(2)
A 		38.2
(1.9)
A 		35
C 65.4
(3)
A 		47.5
(1.1)
A 		8.9
(-3)
A 		45.3
(0.9)
A 		48
(1.2)
A 		25.9
(-1.2)
A 		57
avr 49.4
(2.3) 		53
(3) 		37.8
(-0.1) 		23.1
(-3) 		45.3
(1.5) 		49.4
(2.3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 38.2
(3)
A 		2.8
(-3)
A 		16.8
(-0.6)
A 		12.4
(-1.4)
A 		35
B 17.5
(2.8)
A 		17.9
(3)
A 		14.5
(1)
A 		7.8
(-3)
A 		10
C 28.4
(3)
A 		17.8
(-0.6)
A 		16.5
(-1)
A 		10.5
(-3)
A 		18
avr 28
(3) 		12.8
(-2.1) 		15.9
(-1.1) 		10.2
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 7.2
(-2)
A 		24.3
(3)
A 		13.1
(-0.2)
A 		3.6
(-3)
A 		14.9
(0.3)
A 		20.5
(1.9)
A 		21
B 15.3
(2.9)
A 		14.4
(2.4)
A 		10.8
(0.8)
A 		2.6
(-3)
A 		15.6
(3)
A 		14.2
(2.4)
A 		13
C 24.2
(3)
A 		14.5
(0.3)
A 		2.3
(-3)
A 		9.1
(-1.1)
A 		15.5
(0.6)
A 		8.7
(-1.2)
A 		22
avr 15.6
(2) 		17.7
(3) 		8.7
(-1.3) 		5.1
(-3) 		15.3
(1.9) 		14.5
(1.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5753
Sequence Type Exemplar sequence
Representative Public ID F07E5.1 NCBI
Target Description F07E5.1 /REP_DB=WormBase Gene ID /WP=CE09214 /TR=P91225 /GB=AAB37901.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061769 NCBI Caenorhabditis elegans F07E5.1 (F07E5.1) mRNA, complete cds. 11/11 None
SNAP00000023368 ENSEMBL cdna:SNAP chromosome:CEL140:II:2068113:2069096:1 9/11 None
GENEFINDER00000023375 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2064143:2069786:1 11/11 None
F07E5.1 ENSEMBL cdna:known chromosome:CEL140:II:2064463:2068972:1 gene:F07E5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023367 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2064461-2068971(+) 97.59 100.0
Public Domain and Genome References
Gene Title
Ensembl F07E5.1
Entrez Gene 184141 Entrez gene
SwissProt P91225 EMBL-EBI
WormBase CE09214 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37901 Hypothetical protein F07E5.1 [Caenorhabditis elegans] ref|NP_494170.1| F07E5.1 [Caenorhabditis elegans] 0.0
blast AAB37901 Hypothetical protein F07E5.1 [Caenorhabditis elegans] ref|NP_494170.1| F07E5.1 [Caenorhabditis elegans] 1.0E-163
blast AAB37901 Hypothetical protein F07E5.1 [Caenorhabditis elegans] ref|NP_494170.1| F07E5.1 [Caenorhabditis elegans] 2.0E-70
blast CAB05287 Hypothetical protein T27E7.1 [Caenorhabditis elegans] ref|NP_502759.1| T27E7.1 [Caenorhabditis elegans] 9.0E-20
blast AAB37900 Hypothetical protein F07E5.4 [Caenorhabditis elegans] ref|NP_494166.1| F07E5.4 [Caenorhabditis elegans] 4.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0010
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0010
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023375 1 580-602
Sequence
Target Sequence 
>C. ELEGANS:180197_AT
gattcatattacccgttcaacagattgacctatgccagaaattatttgaaactgcggtgc
aaagtcataggcttttgcttcaaaatttcgattacctaggaatcaatcttggttcaaatg
gaaaacctcacagtattcttgcaatgaacaacgacttcaactatccattcccagtggaca
ctgttaatagtcaattaattttccaacatctacatcccttgccagaagaccttgatgaca
gttcagtacaacatctgatcaatcgtttgcggctggaatcaatcgacttgaaagagttca
atatgacggaatggatggccgcattagtccgtggtcaggaattacatgaaattactcttg
ggaaattcgaaaagctgacaaattttgccaagaaaataaatgcgtctgcctggaacgtaa
aaattgtttcattattggaacatatgattcaactggataagaggtccaaactcacctacc
taaatctcagtccatcttggcttcccagaactgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCATATTACCCGTTCAACAGAT 570 431 770 Antisense
AAAACCTCACAGTATTCTTGCAATG 539 131 891 Antisense
AACTATCCATTCCCAGTGGACACTG 37 141 928 Antisense
TTAATTTTCCAACATCTACATCCCT 549 683 964 Antisense
ATCCCTTGCCAGAAGACCTTGATGA 34 39 983 Antisense
ACATCTGATCAATCGTTTGCGGCTG 479 105 1020 Antisense
GGAATGGATGGCCGCATTAGTCCGT 80 531 1077 Antisense
ATAAATGCGTCTGCCTGGAACGTAA 505 19 1165 Antisense
TAAGAGGTCCAAACTCACCTACCTA 506 637 1227 Antisense
ACCTAAATCTCAGTCCATCTTGGCT 9 89 1247 Antisense
CCATCTTGGCTTCCCAGAACTGAGG 269 271 1261 Antisense
Sequence Source Affymetrix Proprietary Database