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[180196_at]

Description T06A1.3 /REP_DB=WormBase Gene ID /WP=CE18207 /TR=O61927 /GB=AAC17773.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 63.5
(0.1)
P 		58.4
(-0.3)
A 		17.5
(-3)
A 		107.5
(3)
P 		90
B 48.1
(0.7)
M 		9.7
(-2.6)
A 		4.6
(-3)
A 		75.4
(3)
M 		71
C 116
(3)
P 		44.5
(-1.7)
A 		24.4
(-3)
A 		113.5
(2.8)
P 		92
avr 75.9
(1.4) 		37.5
(-1.4) 		15.5
(-3) 		98.8
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 39
(1.5)
A 		27.9
(-0.4)
A 		16
(-2.3)
A 		47.9
(3)
A 		35.4
(0.9)
A 		12.1
(-3)
A 		36
B 58
(3)
P 		40.6
(0.8)
A 		39.4
(0.6)
A 		21.5
(-1.7)
A 		33.9
(-0.1)
A 		11.4
(-3)
A 		47
C 41.4
(-0.2)
A 		74.1
(3)
P 		40.6
(-0.3)
A 		13.7
(-3)
A 		14.5
(-2.9)
A 		23.6
(-2)
A 		60
avr 46.1
(2.7) 		47.5
(3) 		32
(0.1) 		27.7
(-0.7) 		27.9
(-0.7) 		15.7
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 23.1
(3)
P 		12.7
(-0.4)
A 		4.6
(-3)
A 		15.7
(0.6)
P 		19
B 15.3
(2.7)
M 		2.4
(-2.5)
A 		1.1
(-3)
A 		16.1
(3)
M 		15
C 38.4
(3)
P 		12.8
(-2.1)
A 		8.5
(-3)
A 		19.1
(-0.9)
P 		30
avr 25.6
(3) 		9.3
(-1.7) 		4.7
(-3) 		17
(0.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.2
(-0.2)
A 		9.9
(1.5)
A 		3.5
(-2.7)
A 		12.1
(3)
A 		10.7
(2.1)
A 		3
(-3)
A 		9
B 20.2
(3)
P 		13.5
(0.5)
A 		9.6
(-1)
A 		5.7
(-2.4)
A 		13.8
(0.6)
A 		4.2
(-3)
A 		16
C 15.3
(0.8)
A 		22.6
(3)
P 		10.3
(-0.7)
A 		2.7
(-3)
A 		4.7
(-2.4)
A 		7.9
(-1.4)
A 		20
avr 14.2
(2.4) 		15.3
(3) 		7.8
(-1.4) 		6.8
(-2) 		9.7
(-0.3) 		5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14836
Sequence Type Exemplar sequence
Representative Public ID T06A1.3 NCBI
Target Description T06A1.3 /REP_DB=WormBase Gene ID /WP=CE18207 /TR=O61927 /GB=AAC17773.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071135 NCBI Caenorhabditis elegans T06A1.3 (T06A1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000019766 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1947720:1952956:1 10/11 None
T06A1.3 ENSEMBL cdna:known chromosome:CEL140:V:1950020:1952956:1 gene:T06A1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1950019-1952956(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06A1.3
Entrez Gene 188155 Entrez gene
SwissProt O61927 EMBL-EBI
WormBase CE18207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503536 T06A1.3 [Caenorhabditis elegans] gb|AAC17773.1| Hypothetical protein T06A1.3 [Caenorhabditis elegans] 1.0E-77
blast NP_503536 T06A1.3 [Caenorhabditis elegans] gb|AAC17773.1| Hypothetical protein T06A1.3 [Caenorhabditis elegans] 2.0E-69
blast CAE56950 Hypothetical protein CBG24799 [Caenorhabditis briggsae] 2.0E-59
blast CAE56950 Hypothetical protein CBG24799 [Caenorhabditis briggsae] 4.0E-56
Sequence
Target Sequence 
>C. ELEGANS:180196_AT
ggacaatcacatatatctcaacgacttcccgcaaaacaaggacttgtatctgaagctgaa
aaatgtgaacgcgcagacggtcgacatgaactgcagtgatcccgggtttgaagcgattgc
ggcgcagtatttgaaggtgtttgatgacgtcataactgcggtcgaggagaagccgggaga
tgtgcagacggcgtgcgataggttacaggcgagttctattccatttttaaatgattttct
gtcattgaaagtctccggaatggacggaacaatgttccaaaatatggaggagccattcat
ccaaatggtcagccacattctacaggaccgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAATCACATATATCTCAACGAC 207 527 27 Antisense
TCAACGACTTCCCGCAAAACAAGGA 327 629 44 Antisense
AATGTGAACGCGCAGACGGTCGACA 265 163 88 Antisense
ACATGAACTGCAGTGATCCCGGGTT 427 107 110 Antisense
GTGATCCCGGGTTTGAAGCGATTGC 445 481 122 Antisense
ATTGCGGCGCAGTATTTGAAGGTGT 134 3 142 Antisense
GATGACGTCATAACTGCGGTCGAGG 506 411 169 Antisense
GACGGCGTGCGATAGGTTACAGGCG 504 363 213 Antisense
ACAGGCGAGTTCTATTCCATTTTTA 419 107 231 Antisense
CATTCATCCAAATGGTCAGCCACAT 457 215 320 Antisense
TCAGCCACATTCTACAGGACCGATT 642 625 335 Antisense
Sequence Source Affymetrix Proprietary Database