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[180194_at]

Description W02G9.3 /REP_DB=WormBase Gene ID /WP=CE18316 /TR=O61900 /GB=AAC17683.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 7.7
(-3)
A 		11.9
(3)
A 		8.5
(-1.9)
A 		9.1
(-1)
A 		4
B 11.1
(-2.6)
A 		8.9
(-2.9)
A 		53
(3)
A 		8.5
(-3)
A 		45
C 3.6
(-3)
A 		23.4
(3)
A 		8.5
(-1.5)
A 		11.6
(-0.6)
A 		20
avr 7.5
(-3) 		14.7
(-0.3) 		23.3
(3) 		9.7
(-2.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.2
(2)
A 		11.2
(3)
A 		8.3
(0.1)
A 		5.2
(-2.9)
A 		6.5
(-1.6)
A 		5.1
(-3)
A 		6
B 6.7
(-3)
A 		8.9
(-2.2)
A 		23.8
(3)
A 		9.3
(-2.1)
A 		7.6
(-2.7)
A 		8.8
(-2.3)
A 		17
C 5.1
(-0.7)
A 		6.7
(1.1)
A 		5.3
(-0.5)
A 		8.4
(3)
A 		3.1
(-3)
A 		7.4
(1.9)
A 		5
avr 7.3
(-1.6) 		8.9
(-0.2) 		12.5
(3) 		7.6
(-1.3) 		5.7
(-3) 		7.1
(-1.8) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.8
(3)
A 		2.6
(2.2)
A 		2.2
(0.6)
A 		1.3
(-3)
A 		2
B 3.5
(-2)
A 		2.2
(-2.8)
A 		12.3
(3)
A 		1.8
(-3)
A 		11
C 1.2
(-3)
A 		6.7
(3)
A 		3
(-1)
A 		1.9
(-2.2)
A 		6
avr 2.5
(-1.8) 		3.8
(0.1) 		5.8
(3) 		1.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.9
(-1.7)
A 		4
(3)
A 		1.8
(-1.9)
A 		1.3
(-3)
A 		2
(-1.4)
A 		1.3
(-3)
A 		3
B 2.3
(-3)
A 		2.9
(-2)
A 		5.8
(3)
A 		2.5
(-2.7)
A 		3.1
(-1.6)
A 		3.3
(-1.3)
A 		4
C 1.9
(0.6)
A 		2
(1)
A 		1.4
(-1.4)
A 		1.7
(-0.2)
A 		1
(-3)
A 		2.5
(3)
A 		2
avr 2
(-2) 		3
(3) 		3
(3) 		1.8
(-3) 		2
(-2) 		2.4
(-0) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180194_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14833
Sequence Type Exemplar sequence
Representative Public ID W02G9.3 NCBI
Target Description W02G9.3 /REP_DB=WormBase Gene ID /WP=CE18316 /TR=O61900 /GB=AAC17683.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071327(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071327 NCBI Caenorhabditis elegans W02G9.3 (W02G9.3) mRNA, complete cds. 11/11 None
SNAP00000022902 ENSEMBL cdna:SNAP chromosome:CEL140:V:2672828:2673800:1 11/11 None
GENEFINDER00000022912 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2672828:2673800:1 11/11 None
W02G9.3 ENSEMBL cdna:known chromosome:CEL140:V:2671291:2673800:1 gene:W02G9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2671290-2673800(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02G9.3
Entrez Gene 178732 Entrez gene
SwissProt O61900 EMBL-EBI
WormBase CE18316 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17683 Hypothetical protein W02G9.3 [Caenorhabditis elegans] ref|NP_503728.1| W02G9.3 [Caenorhabditis elegans] 0.0
blast AAC17683 Hypothetical protein W02G9.3 [Caenorhabditis elegans] ref|NP_503728.1| W02G9.3 [Caenorhabditis elegans] 1.0E-143
blast CAE62532 Hypothetical protein CBG06641 [Caenorhabditis briggsae] 1.0E-111
blast CAE45945 hypothetical protein [Homo sapiens] 5.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR004114 EMBL-EBI THUMP domain 3.1E-17
Pfam IPR004114 EMBL-EBI THUMP domain 3.1E-17
Sequence
Target Sequence 
>C. ELEGANS:180194_AT
tccacaaggctcagaagcacccggaaatccagcagaagctgaagattccgatgaagacat
tgccgatgcgttgaaaaaggcttgtgatgatcagaggcagccgaagccgggaaatttcgt
gaaaaaagagagaagatgcattcaaagaccgacgggagtgaagaattgcatttttgtgag
cgtgaaaaacgcgaatattcaacttttagccgaaaaaatggtcgagctgacgcaaaaagc
tccgcgttgcaggtttttgcaacgagtttacccggtggagcatactttagctgtggatct
ttcaaaaatgaatgaagttttgatgaaggtaatctccgacacattgaaggcagacggcac
tggcaaacttcccacgtattccgtggaatttaaagcgagaaataacgattctgtggcgaa
gaattccgtgctccaaatggtcgatgacgccgtttgtgcgctggctccgactgcgagagt
tagcctaaatcacgccgacgtcacattcttcgttcaagtatctcgtacgacaattatggt
tggcgtgtgccggcaattttacgaccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACAAGGCTCAGAAGCACCCGGA 272 587 438 Antisense
CAAAAAGCTCCGCGTTGCAGGTTTT 621 183 670 Antisense
TTGCAACGAGTTTACCCGGTGGAGC 51 643 694 Antisense
AAGGCAGACGGCACTGGCAAACTTC 221 159 784 Antisense
GGCAAACTTCCCACGTATTCCGTGG 397 527 799 Antisense
TGTGGCGAAGAATTCCGTGCTCCAA 385 553 849 Antisense
AAATGGTCGATGACGCCGTTTGTGC 277 121 872 Antisense
GCTCCGACTGCGAGAGTTAGCCTAA 109 299 901 Antisense
TAAATCACGCCGACGTCACATTCTT 336 641 923 Antisense
GTCACATTCTTCGTTCAAGTATCTC 153 465 937 Antisense
GTGTGCCGGCAATTTTACGACCGCC 3 489 982 Antisense
Sequence Source Affymetrix Proprietary Database