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[180193_at]

Description F14F9.4 /REP_DB=WormBase Gene ID /WP=CE09390 /TR=Q9GUC8 /GB=AAF98619.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_high_8_8 > 32      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 339.2
(3)
P 		86.6
(-2.9)
P 		149.9
(-1.4)
P 		82.4
(-3)
M 		257
B 353.4
(3)
P 		96.4
(-3)
P 		123.2
(-2.4)
P 		111.2
(-2.7)
P 		257
C 377
(3)
P 		79.4
(-3)
P 		170
(-1.2)
P 		119
(-2.2)
P 		298
avr 356.5
(3) 		87.5
(-3) 		147.7
(-1.7) 		104.2
(-2.6) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 550.2
(3)
P 		416.1
(1.3)
P 		247.4
(-0.9)
P 		232.6
(-1.1)
P 		157.1
(-2)
P 		81.1
(-3)
P 		469
B 610
(3)
P 		474.4
(1.3)
P 		252.7
(-1.4)
P 		183.2
(-2.2)
P 		131.2
(-2.9)
P 		119.2
(-3)
P 		491
C 495
(3)
P 		467.4
(2.6)
P 		220.6
(-1.1)
P 		140.8
(-2.3)
P 		123.3
(-2.5)
P 		92.5
(-3)
P 		403
avr 551.7
(3) 		452.6
(1.7) 		240.2
(-1.1) 		185.5
(-1.8) 		137.2
(-2.5) 		97.6
(-3) 		454
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 123.5
(3)
P 		18.8
(-2.6)
P 		39.2
(-1.5)
P 		12.1
(-3)
M 		111
B 112.7
(3)
P 		23.8
(-3)
P 		28.5
(-2.7)
P 		23.7
(-3)
P 		89
C 124.8
(3)
P 		22.8
(-2.8)
P 		59.2
(-0.8)
P 		20.1
(-3)
P 		105
avr 120.3
(3) 		21.8
(-2.8) 		42.3
(-1.6) 		18.6
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 101.4
(0.8)
P 		148
(3)
P 		53.9
(-1.4)
P 		59
(-1.2)
P 		47.4
(-1.7)
P 		19.7
(-3)
P 		128
B 212.3
(3)
P 		157.9
(1.1)
P 		61.4
(-2.4)
P 		48.5
(-2.9)
P 		53.3
(-2.7)
P 		44.5
(-3)
P 		168
C 183.5
(3)
P 		142.6
(1.4)
P 		56.1
(-1.9)
P 		28.3
(-3)
P 		39.9
(-2.6)
P 		31
(-2.9)
P 		155
avr 165.7
(3) 		149.5
(2.3) 		57.1
(-1.9) 		45.3
(-2.4) 		46.9
(-2.3) 		31.7
(-3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14809
Sequence Type Exemplar sequence
Representative Public ID F14F9.4 NCBI
Target Description F14F9.4 /REP_DB=WormBase Gene ID /WP=CE09390 /TR=Q9GUC8 /GB=AAF98619.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071973 NCBI Caenorhabditis elegans F14F9.4 (F14F9.4) mRNA, complete cds. 11/11 None
SNAP00000039408 ENSEMBL cdna:SNAP chromosome:CEL140:V:5132574:5141273:1 11/11 None
GENEFINDER00000039417 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5132574:5136838:1 11/11 None
F14F9.4 ENSEMBL cdna:known chromosome:CEL140:V:5132554:5136913:1 gene:F14F9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5132573-5136838(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F9.4
Entrez Gene 178901 Entrez gene
SwissProt Q9GUC8 EMBL-EBI
WormBase CE09390 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504374 F14F9.4 [Caenorhabditis elegans] gb|AAF98619.1| Hypothetical protein F14F9.4 [Caenorhabditis elegans] 0.0
blast CAE64080 Hypothetical protein CBG08684 [Caenorhabditis briggsae] 0.0
blast CAE64066 Hypothetical protein CBG08668 [Caenorhabditis briggsae] 0.0
blast NP_504375 F14F9.3 [Caenorhabditis elegans] gb|AAF98617.1| Hypothetical protein F14F9.3 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180193_AT
gaaaagaagtttacagttccctgctcccagaagaatttctaatctgccccaactgcaaaa
taactatcgatacgcacacaatgtctactgtatggaaacacgaatacttcccatttaacc
cccggttccggaaacttgttgaaagtgattatacgattcttggtcgaaactataacgagc
gtccatatgtaccaccaattgcagtttatacggagcttgaaaagattcctggaatcaaag
cttccgttattgaaacatgtgcagcggcgagagatgtgagatataatgttcatacaagaa
atcgagctgtaaaccgtgaacatgtcttgattcggaaaggagttttgagcccagaaatca
tggggaatctgttagggactaccgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGAAGTTTACAGTTCCCTGCT 242 355 2159 Antisense
GTTCCCTGCTCCCAGAAGAATTTCT 317 441 2174 Antisense
ATTTCTAATCTGCCCCAACTGCAAA 34 17 2193 Antisense
ATCGATACGCACACAATGTCTACTG 342 35 2224 Antisense
TATAACGAGCGTCCATATGTACCAC 415 659 2329 Antisense
TACCACCAATTGCAGTTTATACGGA 257 649 2348 Antisense
GATTCCTGGAATCAAAGCTTCCGTT 121 433 2382 Antisense
GAAACATGTGCAGCGGCGAGAGATG 160 357 2410 Antisense
GAGCTGTAAACCGTGAACATGTCTT 155 385 2462 Antisense
GAAAGGAGTTTTGAGCCCAGAAATC 384 357 2493 Antisense
GGGAATCTGTTAGGGACTACCGTGT 53 491 2521 Antisense
Sequence Source Affymetrix Proprietary Database