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[180192_at]

Description C49G7.5 /REP_DB=WormBase Gene ID /WP=CE08863 /TR=O16224 /GB=AAK18900.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 27      6grp_total > 27      4grp_total > 04      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 659
1 2 3 4 range
A 119.1
(-1.5)
P 		47
(-2.5)
A 		14.2
(-3)
A 		446.3
(3)
P 		432
B 133.1
(-1.9)
P 		18.8
(-2.9)
A 		10.9
(-3)
A 		669.5
(3)
P 		659
C 122.2
(-1.6)
P 		18.1
(-3)
A 		36
(-2.8)
A 		478.7
(3)
P 		461
avr 124.8
(-1.8) 		28
(-2.9) 		20.4
(-3) 		531.5
(3) 		511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 331.6
(3)
P 		251.3
(0.9)
P 		120.8
(-2.5)
P 		215.6
(-0.1)
P 		103.6
(-3)
A 		207.5
(-0.3)
P 		228
B 374.2
(3)
P 		249.2
(-0.1)
P 		185.2
(-1.7)
P 		145.4
(-2.7)
P 		133.9
(-3)
M 		185.3
(-1.7)
P 		240
C 375.1
(3)
P 		260.8
(0.6)
P 		128.6
(-2.2)
A 		170.7
(-1.3)
P 		88.1
(-3)
P 		172.7
(-1.2)
P 		287
avr 360.3
(3) 		253.8
(0.5) 		144.9
(-2.1) 		177.2
(-1.4) 		108.5
(-3) 		188.5
(-1.1) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 43.4
(0.9)
P 		10.2
(-2.4)
A 		3.7
(-3)
A 		65.3
(3)
P 		62
B 42.4
(-1.3)
P 		4.6
(-2.9)
A 		2.5
(-3)
A 		142.7
(3)
P 		140
C 40.5
(-0.2)
P 		5.2
(-3)
A 		12.6
(-2.4)
A 		80.7
(3)
P 		76
avr 42.1
(-0.6) 		6.7
(-3) 		6.3
(-3) 		96.2
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 61.1
(0.3)
P 		89.4
(3)
P 		26.3
(-3)
P 		54.7
(-0.3)
P 		31.3
(-2.5)
A 		50.5
(-0.7)
P 		63
B 130.2
(3)
P 		83
(-0.1)
P 		45
(-2.6)
P 		38.5
(-3)
P 		54.4
(-2)
M 		69.1
(-1)
P 		92
C 139.1
(3)
P 		79.6
(-0.2)
P 		32.7
(-2.8)
A 		34.3
(-2.7)
P 		28.5
(-3)
P 		57.8
(-1.4)
P 		111
avr 110.1
(3) 		84
(0.9) 		34.7
(-3) 		42.5
(-2.4) 		38.1
(-2.7) 		59.1
(-1.1) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14808
Sequence Type Exemplar sequence
Representative Public ID C49G7.5 NCBI
Target Description C49G7.5 /REP_DB=WormBase Gene ID /WP=CE08863 /TR=O16224 /GB=AAK18900.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071727 NCBI Caenorhabditis elegans C49G7.5 (C49G7.5) mRNA, complete cds. 11/11 None
SNAP00000008206 ENSEMBL cdna:SNAP chromosome:CEL140:V:4042217:4043223:1 11/11 None
GENEFINDER00000008219 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4042217:4043311:1 11/11 None
C49G7.5 ENSEMBL cdna:known chromosome:CEL140:V:4042217:4043408:1 gene:C49G7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4042216-4043311(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49G7.5
Entrez Gene 183619 Entrez gene
SwissProt O16224 EMBL-EBI
WormBase CE08863 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18900 Hypothetical protein C49G7.5 [Caenorhabditis elegans] ref|NP_504128.1| C49G7.5 [Caenorhabditis elegans] 1.0E-145
blast AAK18900 Hypothetical protein C49G7.5 [Caenorhabditis elegans] ref|NP_504128.1| C49G7.5 [Caenorhabditis elegans] 1.0E-135
blast AAK18901 Hypothetical protein C49G7.7 [Caenorhabditis elegans] ref|NP_504125.1| C49G7.7 [Caenorhabditis elegans] 7.0E-43
blast AAK18901 Hypothetical protein C49G7.7 [Caenorhabditis elegans] ref|NP_504125.1| C49G7.7 [Caenorhabditis elegans] 3.0E-42
blast CAE58291 Hypothetical protein CBG01398 [Caenorhabditis briggsae] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:180192_AT
aatcctgatattctgtatgggcttcagaggagctatcagaatatgggtgtgatggtagca
gaaagagttagtcttagaagcacacctcattattgcattgtttcaatcaacaattattac
cgtaacttctttgatcaattccctatccgtcatttacatcagctacaggatcataattat
cagtgccagtccacaaactcaattcgtggccaacctttcaaaagtctacaacctgaaaac
agaactcccacacaagttactgggcatcagcaagaatcttctgcaaatgtcagtgtagct
tatcacatcataacgccgccgaaaaattatgaagttctacgaaataaagactttcgcgtt
ggacatagtgatcggaatggcattagaactattgcacgacggcggagatttcagttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCTGATATTCTGTATGGGCTTC 286 167 271 Antisense
GAAGCACACCTCATTATTGCATTGT 532 341 347 Antisense
CTTCTTTGATCAATTCCCTATCCGT 294 221 396 Antisense
CCCTATCCGTCATTTACATCAGCTA 339 259 411 Antisense
TTATCAGTGCCAGTCCACAAACTCA 88 679 447 Antisense
CACAAACTCAATTCGTGGCCAACCT 382 193 462 Antisense
ACAGAACTCCCACACAAGTTACTGG 506 107 509 Antisense
GGGCATCAGCAAGAATCTTCTGCAA 660 491 532 Antisense
TATCACATCATAACGCCGCCGAAAA 217 659 571 Antisense
GACTTTCGCGTTGGACATAGTGATC 140 371 619 Antisense
GCACGACGGCGGAGATTTCAGTTCA 643 313 664 Antisense
Sequence Source Affymetrix Proprietary Database