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[180191_at]

Description F40C5.2 /REP_DB=WormBase Gene ID /WP=CE23710 /TR=Q9N5U4 /GB=AAF39798.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 26.7
(-2.6)
A 		42.3
(-1.5)
A 		20
(-3)
A 		111.8
(3)
P 		92
B 46
(1.1)
P 		8.6
(-3)
A 		24.1
(-1.3)
A 		62.9
(3)
P 		54
C 40.6
(-2.3)
P 		20.7
(-3)
A 		27.1
(-2.8)
A 		184.2
(3)
P 		164
avr 37.8
(-2.1) 		23.9
(-3) 		23.7
(-3) 		119.6
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 3.7
(-3)
A 		20.4
(-0.9)
A 		51.3
(3)
P 		19.1
(-1.1)
A 		40.2
(1.6)
P 		23.9
(-0.5)
A 		48
B 17.9
(-1.7)
A 		31.3
(0.4)
A 		10.1
(-3)
A 		37.2
(1.4)
A 		47.3
(3)
P 		37.4
(1.4)
P 		37
C 32.3
(-1.3)
M 		70.2
(3)
P 		49.1
(0.6)
A 		31.6
(-1.4)
A 		17.8
(-3)
A 		22.8
(-2.4)
A 		52
avr 18
(-3) 		40.6
(3) 		36.8
(2) 		29.3
(0) 		35.1
(1.5) 		28
(-0.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 9.7
(-0.6)
A 		9.2
(-0.9)
A 		5.2
(-3)
A 		16.4
(3)
P 		11
B 14.7
(3)
P 		2.1
(-3)
A 		5.6
(-1.3)
A 		13.4
(2.4)
P 		13
C 13.4
(-1.2)
P 		5.9
(-3)
A 		9.5
(-2.1)
A 		31.1
(3)
P 		25
avr 12.6
(-0.2) 		5.7
(-3) 		6.8
(-2.5) 		20.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 0.7
(-3)
A 		7.3
(0.5)
A 		11.2
(2.5)
P 		4.8
(-0.8)
A 		12.1
(3)
P 		5.8
(-0.3)
A 		11
B 6.2
(-1.7)
A 		10.4
(-0.2)
A 		2.5
(-3)
A 		9.9
(-0.3)
A 		19.2
(3)
P 		13.9
(1.1)
P 		17
C 12
(-0.6)
M 		21.4
(3)
P 		12.5
(-0.4)
A 		6.4
(-2.7)
A 		5.7
(-3)
A 		7.6
(-2.3)
A 		16
avr 6.3
(-3) 		13
(3) 		8.7
(-0.9) 		7
(-2.4) 		12.3
(2.4) 		9.1
(-0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15447
Sequence Type Exemplar sequence
Representative Public ID F40C5.2 NCBI
Target Description F40C5.2 /REP_DB=WormBase Gene ID /WP=CE23710 /TR=Q9N5U4 /GB=AAF39798.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071603(11), NM_071602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071603 NCBI Caenorhabditis elegans F40C5.2 (F40C5.2) mRNA, complete cds. 11/11 A 
NM_071602 NCBI Caenorhabditis elegans T24A6.17 (T24A6.17) mRNA, complete cds. 11/11 None
F40C5.2 ENSEMBL cdna:known chromosome:CEL140:V:3569997:3571216:1 gene:F40C5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017917 1/11 Cross Hyb Matching Probes None
SNAP00000004813 1/11 Cross Hyb Matching Probes None
SNAP00000026430 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026775 1/11 Cross Hyb Matching Probes None
SNAP00000027435 1/11 Cross Hyb Matching Probes None
GENEFINDER00000027436 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3569996-3571216(+) 100.0 100.0
chrV:19570801-19572017(+) 97.76 97.76
chrIII:9409255-9410474(-) 98.98 98.98
chrV:3564064-3565284(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F40C5.2
Entrez Gene 185515 Entrez gene
188834 Entrez gene
SwissProt O61953 EMBL-EBI
WormBase CE23710 Wormbase
CE23710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17804 Hypothetical protein T24A6.17 [Caenorhabditis elegans] gb|AAF39798.1| Hypothetical protein F40C5.2 [Caenorhabditis elegans] ref|NP_504003.2| T24A6.17 [Caenorhabditis elegans] ref|NP_504004.1| F40C5.2 [Caenorhabditis elegans] 5.0E-73
Sequence
Target Sequence 
>C. ELEGANS:180191_AT
atgtctcacatcgggcaagcaagatatcaaaaaattatcaactacacacttgttcaagtt
gttatggaacatgtttcatgtttaatagtttctcgctttgtgtgcagagtgctcctatct
gctcaaccatcggagataacaaaaagttacaataagtcatttgtcaatcacttcattcct
aacaactttctaaacattttggaagtactgactttcaataaacaagccaaattgactgtt
gaatttttttgcccaggacaattctttgatttttttggcaaaaataattattttcccaag
aattatgtatattttgcaggtgaatacaaaggattggaggacatggaattggcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTCACATCGGGCAAGCAAGAT 389 49 13 Antisense
TTATCAACTACACACTTGTTCAAGT 209 679 47 Antisense
GTTTCATGTTTAATAGTTTCTCGCT 120 451 85 Antisense
GTTTCTCGCTTTGTGTGCAGAGTGC 276 451 100 Antisense
GTGCAGAGTGCTCCTATCTGCTCAA 253 481 114 Antisense
CTCCTATCTGCTCAACCATCGGAGA 258 235 124 Antisense
GTCATTTGTCAATCACTTCATTCCT 213 467 168 Antisense
TCACTTCATTCCTAACAACTTTCTA 666 627 180 Antisense
ATTGACTGTTGAATTTTTTTGCCCA 349 5 243 Antisense
TTTTTGCCCAGGACAATTCTTTGAT 408 673 258 Antisense
GATTGGAGGACATGGAATTGGCTTG 134 435 344 Antisense
Sequence Source Affymetrix Proprietary Database