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[180189_s_at]

Description T06A1.1 /REP_DB=WormBase Gene ID /WP=CE18205 /TR=O61930 /GB=AAC17772.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 49.3
(-3)
A 		86
(3)
A 		69.7
(0.3)
A 		70
(0.4)
A 		37
B 34.7
(-2.3)
A 		74.8
(1.4)
A 		91.9
(3)
A 		26.7
(-3)
A 		65
C 54.1
(0.1)
A 		21.1
(-3)
A 		84.2
(3)
A 		30.1
(-2.1)
A 		63
avr 46
(-2.4) 		60.6
(-0.2) 		81.9
(3) 		42.3
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 62.8
(-3)
A 		93.4
(-0.2)
A 		129.1
(3)
A 		120.2
(2.2)
A 		67.5
(-2.6)
A 		68.8
(-2.5)
A 		66
B 71.4
(-1.5)
A 		111.2
(0.5)
A 		158.8
(3)
M 		118.4
(0.9)
A 		43.2
(-3)
A 		86.3
(-0.8)
A 		116
C 72.1
(-2.5)
A 		122.9
(0.2)
A 		175
(3)
A 		82.2
(-2)
A 		63.6
(-3)
A 		117.3
(-0.1)
A 		111
avr 68.8
(-2.3) 		109.2
(0.2) 		154.3
(3) 		106.9
(0) 		58.1
(-3) 		90.8
(-1) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 18
(2.5)
A 		18.7
(3)
A 		18.2
(2.6)
A 		10.2
(-3)
A 		9
B 11.1
(-0.9)
A 		18.5
(1.9)
A 		21.3
(3)
A 		5.7
(-3)
A 		16
C 17.9
(0.2)
A 		6.1
(-2.8)
A 		29.3
(3)
A 		5.1
(-3)
A 		24
avr 15.7
(0.3) 		14.4
(-0.2) 		22.9
(3) 		7
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 11.6
(-3)
A 		33.2
(3)
A 		28.1
(1.6)
A 		30.5
(2.3)
A 		20.4
(-0.6)
A 		16.7
(-1.6)
A 		22
B 24.9
(-0.9)
A 		37
(2.5)
A 		38.6
(3)
M 		31.4
(0.9)
A 		17.6
(-3)
A 		32.2
(1.2)
A 		21
C 26.7
(-0.8)
A 		37.5
(1.5)
A 		44.5
(3)
A 		16.5
(-3)
A 		20.6
(-2.1)
A 		39.3
(1.9)
A 		28
avr 21.1
(-2.5) 		35.9
(2.6) 		37.1
(3) 		26.1
(-0.8) 		19.5
(-3) 		29.4
(0.4) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180189_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15442
Sequence Type Exemplar sequence
Representative Public ID T06A1.1 NCBI
Target Description T06A1.1 /REP_DB=WormBase Gene ID /WP=CE18205 /TR=O61930 /GB=AAC17772.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071132 NCBI Caenorhabditis elegans T06A1.1 (T06A1.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000019764 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1922992:1925378:-1 11/11 None
T06A1.1 ENSEMBL cdna:known chromosome:CEL140:V:1922992:1925393:-1 gene:T06A1.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019757 5/11 Cross Hyb Matching Probes None
SNAP00000019758 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1922991-1925378(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06A1.1
Entrez Gene 178673 Entrez gene
SwissProt O61930 EMBL-EBI
WormBase CE18205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503533 T06A1.1 [Caenorhabditis elegans] gb|AAC17772.1| Hypothetical protein T06A1.1 [Caenorhabditis elegans] 0.0
blast CAE56906 Hypothetical protein CBG24747 [Caenorhabditis briggsae] 1.0E-159
blast CAE58528 Hypothetical protein CBG01683 [Caenorhabditis briggsae] 1.0E-141
blast CAE56906 Hypothetical protein CBG24747 [Caenorhabditis briggsae] 1.0E-135
blast AAB65375 Hypothetical protein C05C8.8 [Caenorhabditis elegans] ref|NP_504844.1| C05C8.8 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.4E-49
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.8E-48
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.4E-115
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503533.1 1 7-24
T06A1.1 1 7-24
GENEFINDER00000019764 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:180189_S_AT
gccatcatcggagcaggttccattcgaaatgggtcatcaacatggacatcgacgaacgtg
tcatatataccgggccgaataatttcatacatttctttaggtcgatcccctcaaattttt
ctgagatcagcttaagctcaaatcgagtgctcaaaactcatgagttacctgaaaggttta
aaaatgaaaatgaacttcgtgccgagatgatgttcttgaagtacaaccagaccactgaga
tcagctggtacaatttgaaaggaataattcgtccagaaatggttgctctcttgttctatc
attggtcatgcaggcagtttgatgagacacatgtaatgtcagtgccgaagagatttgctt
atgtcagacactaccgaagtgtggacaacaacaaattgaacagcaactggaggacctttt
acaaaggagacctaaccgaaacacgactagctgagccatttgaaaagcaactcattgaag
cggtcacgaaacgtgtcaaatacgtgtatgagcaacgaatgatccgctgcgaagaaatac
cgccgtggatatttgatcggtttgagaggcggttactag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCATCATCGGAGCAGGTTCCATTC 204 281 644 Antisense
GGGTCATCAACATGGACATCGACGA 584 497 674 Antisense
GAACGTGTCATATATACCGGGCCGA 353 347 697 Antisense
CATACATTTCTTTAGGTCGATCCCC 143 213 729 Antisense
GTCGATCCCCTCAAATTTTTCTGAG 670 473 744 Antisense
ACTTCGTGCCGAGATGATGTTCTTG 643 101 837 Antisense
ACAACCAGACCACTGAGATCAGCTG 217 111 866 Antisense
TCGTCCAGAAATGGTTGCTCTCTTG 214 605 912 Antisense
TGCTCTCTTGTTCTATCATTGGTCA 365 581 927 Antisense
AATACCGCCGTGGATATTTGATCGG 548 171 1179 Antisense
GATCGGTTTGAGAGGCGGTTACTAG 90 285 1198 Antisense
Sequence Source Affymetrix Proprietary Database