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[180188_at]

Description W02G9.5 /REP_DB=WormBase Gene ID /WP=CE18318 /TR=O61903 /GB=AAC17686.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 3
(-3)
A 		4
(-2.8)
A 		4.9
(-2.6)
A 		31.3
(3)
A 		28
B 32.5
(3)
A 		8.4
(-1.7)
A 		1.9
(-3)
A 		17.1
(-0)
A 		31
C 2.1
(-2.8)
A 		3.2
(-1.9)
A 		1.8
(-3)
A 		9.5
(3)
A 		8
avr 12.5
(0.5) 		5.2
(-2.2) 		2.9
(-3) 		19.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4
(-0.8)
A 		3
(-2)
A 		2.2
(-3)
A 		3.5
(-1.4)
A 		6.8
(2.8)
A 		7
(3)
A 		5
B 1.6
(-2.9)
A 		2.4
(-2.5)
A 		11.6
(3)
A 		1.5
(-3)
A 		1.8
(-2.8)
A 		9.1
(1.5)
A 		10
C 2.1
(-2.9)
A 		1.8
(-3)
A 		8.6
(-1.3)
A 		25.4
(3)
A 		1.9
(-3)
A 		2.9
(-2.7)
A 		24
avr 2.6
(-2.8) 		2.4
(-3) 		7.5
(1) 		10.1
(3) 		3.5
(-2.1) 		6.3
(0) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.1
(-2.7)
A 		0.9
(-3)
A 		1.3
(-2.4)
A 		4.6
(3)
A 		4
B 10.4
(3)
A 		2.1
(-2)
A 		0.4
(-3)
A 		3.6
(-1.1)
A 		10
C 0.7
(-2.4)
A 		0.9
(-1.2)
A 		0.6
(-3)
A 		1.6
(3)
A 		1
avr 4.1
(3) 		1.3
(-2.1) 		0.8
(-3) 		3.3
(1.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.7
(-2.3)
A 		1.1
(-0.8)
A 		0.5
(-3)
A 		0.9
(-1.5)
A 		2.1
(3)
A 		1.7
(1.5)
A 		2
B 0.5
(-2.8)
A 		0.8
(-2.2)
A 		2.8
(1.8)
A 		0.4
(-3)
A 		0.7
(-2.4)
A 		3.4
(3)
A 		3
C 0.8
(-2.6)
A 		0.5
(-3)
A 		2.2
(-0.8)
A 		5.1
(3)
A 		0.6
(-2.9)
A 		1
(-2.3)
A 		5
avr 0.7
(-3) 		0.8
(-2.6) 		1.8
(1.7) 		2.1
(3) 		1.1
(-1.3) 		2
(2.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15439
Sequence Type Exemplar sequence
Representative Public ID W02G9.5 NCBI
Target Description W02G9.5 /REP_DB=WormBase Gene ID /WP=CE18318 /TR=O61903 /GB=AAC17686.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071324 NCBI Caenorhabditis elegans W02G9.5 (W02G9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000022913 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2653298:2662482:1 11/11 None
W02G9.5 ENSEMBL cdna:known chromosome:CEL140:V:2657860:2660604:1 gene:W02G9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022899 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2658521-2660748(+) 87.34 100.0
Public Domain and Genome References
Gene Title
Ensembl W02G9.5
Entrez Gene 189127 Entrez gene
SwissProt O61903 EMBL-EBI
WormBase CE32223 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.19237.1.S1_AT hypothetical LOC490287 cfa
CHICKEN:GGAAFFX.6149.1.S1_S_AT angel homolog 2 (Drosophila) gga
HG-U133_PLUS_2:221825_AT angel homolog 2 (Drosophila) hs
HG-U133A_2:221825_AT angel homolog 2 (Drosophila) hs
HG-U133A:221825_AT angel homolog 2 (Drosophila) hs
HU35KSUBA:AA236610_AT angel homolog 2 (Drosophila) hs
HU35KSUBA:RC_AA235286_AT angel homolog 2 (Drosophila) hs
HU35KSUBA:RC_AA148853_AT angel homolog 2 (Drosophila) hs
HU35KSUBC:RC_N30792_AT angel homolog 2 (Drosophila) hs
U133_X3P:HS.301776.0.A1_3P_X_AT angel homolog 2 (Drosophila) hs
U133_X3P:HS.301776.0.A1_3P_AT angel homolog 2 (Drosophila) hs
U133_X3P:HS.157078.0.A2_3P_AT angel homolog 2 (Drosophila) hs
U133_X3P:HS.157078.0.A1_3P_AT angel homolog 2 (Drosophila) hs
U133_X3P:217630_3P_AT angel homolog 2 (Drosophila) hs
HG-U133A_2:217630_AT angel homolog 2 (Drosophila) hs
HG-U133_PLUS_2:217630_AT angel homolog 2 (Drosophila) hs
HG-U133A:217630_AT angel homolog 2 (Drosophila) hs
HG-U133A_2:221826_AT angel homolog 2 (Drosophila) hs
HG-U133_PLUS_2:221826_AT angel homolog 2 (Drosophila) hs
HG-U133A:221826_AT angel homolog 2 (Drosophila) hs
HG-U95AV2:38198_AT angel homolog 2 (Drosophila) hs
HG-U95AV2:38199_AT angel homolog 2 (Drosophila) hs
HG-U95C:61668_AT angel homolog 2 (Drosophila) hs
HG-U95E:75860_AT angel homolog 2 (Drosophila) hs
MOUSE430_2:1453741_X_AT angel homolog 2 (Drosophila) mm
MOE430A:1453741_X_AT angel homolog 2 (Drosophila) mm
MOUSE430A_2:1453741_X_AT angel homolog 2 (Drosophila) mm
MOE430B:1455362_AT angel homolog 2 (Drosophila) mm
MOUSE430_2:1455362_AT angel homolog 2 (Drosophila) mm
MOUSE430_2:1415731_AT angel homolog 2 (Drosophila) mm
MOE430A:1415731_AT angel homolog 2 (Drosophila) mm
MOE430B:1415731_AT angel homolog 2 (Drosophila) mm
MOUSE430A_2:1415731_AT angel homolog 2 (Drosophila) mm
MG-U74AV2:101914_AT angel homolog 2 (Drosophila) mm
MOE430A:1431606_A_AT angel homolog 2 (Drosophila) mm
MOUSE430A_2:1431606_A_AT angel homolog 2 (Drosophila) mm
MOUSE430_2:1431606_A_AT angel homolog 2 (Drosophila) mm
MOE430A:1437050_S_AT angel homolog 2 (Drosophila) mm
MOUSE430A_2:1437050_S_AT angel homolog 2 (Drosophila) mm
MOUSE430_2:1437050_S_AT angel homolog 2 (Drosophila) mm
MOE430A:1448360_S_AT angel homolog 2 (Drosophila) mm
MOUSE430A_2:1448360_S_AT angel homolog 2 (Drosophila) mm
MOUSE430_2:1448360_S_AT angel homolog 2 (Drosophila) mm
MG-U74BV2:164129_AT Angel homolog 2 (Drosophila), mRNA (cDNA clone MGC:27768 IMAGE:2812124) mm
MU19KSUBA:TC16154_AT Angel homolog 2 (Drosophila), mRNA (cDNA clone MGC:27768 IMAGE:2812124) mm
MU19KSUBA:TC23759_AT Angel homolog 2 (Drosophila), mRNA (cDNA clone MGC:27768 IMAGE:2812124) mm
MU19KSUBB:TC31427_AT Angel homolog 2 (Drosophila), mRNA (cDNA clone MGC:27768 IMAGE:2812124) mm
MU19KSUBB:TC33045_AT Angel homolog 2 (Drosophila), mRNA (cDNA clone MGC:27768 IMAGE:2812124) mm
RG-U34B:RC_AI058332_AT similar to D1Ertd396e protein (predicted) rn
RG-U34C:RC_AI170247_AT similar to D1Ertd396e protein (predicted) rn
RAE230A:1398979_AT similar to D1Ertd396e protein (predicted) rn
RAT230_2:1398979_AT similar to D1Ertd396e protein (predicted) rn
RAE230B:1395884_AT similar to D1Ertd396e protein (predicted) rn
RAT230_2:1395884_AT similar to D1Ertd396e protein (predicted) rn
RAE230B:1382784_AT similar to D1Ertd396e protein (predicted) rn
RAT230_2:1382784_AT similar to D1Ertd396e protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC17686 Hypothetical protein W02G9.5 [Caenorhabditis elegans] ref|NP_503725.3| W02G9.5 [Caenorhabditis elegans] 1.0E-151
blast AAC17686 Hypothetical protein W02G9.5 [Caenorhabditis elegans] ref|NP_503725.3| W02G9.5 [Caenorhabditis elegans] 1.0E-145
blast CAE62527 Hypothetical protein CBG06636 [Caenorhabditis briggsae] 5.0E-98
blast CAE62527 Hypothetical protein CBG06636 [Caenorhabditis briggsae] 1.0E-97
blast CAI11673 novel protein similar to human KIAA0759 [Danio rerio] ref|NP_001025131.1| hypothetical protein LOC562704 [Danio rerio] 1.0E-34
blast CAI11673 novel protein similar to human KIAA0759 [Danio rerio] ref|NP_001025131.1| hypothetical protein LOC562704 [Danio rerio] 3.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.5E-21
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 4.7E-22
Sequence
Target Sequence 
>C. ELEGANS:180188_AT
gattgggagcatcgatggcgtgggcttcaggtcgagctgcccacgtttgatgccgacatt
ttgggccttcaagaggttcaggccgaccattttgttgagcattttcagccgcttatgaag
aaatacggctacgaaggtgtctacaagcaaaaattcggtacccagcaaaaagacgacggg
tgcgctttgttctaccatcccgcgaaattcgaactagtcgcgaatcaagaagtcaactat
ttcatatcagacactgcgatctcgaatcgcgaaaatatcgctcaaatcgtggctcttcgg
tgtcgaattacgaaggagctgattctagttgccaatacgcatttgctgttcaacgaggaa
cgcggtgacgtgaagctggctcaactggcgattctgttcgcatcgattcataaaatgcgc
gaggattttgcgccgatggttccgcccgtatttgtgatgggcgattttaacattgagccg
aattccaaggtctacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGGGAGCATCGATGGCGTGGGC 132 435 319 Antisense
GTGGGCTTCAGGTCGAGCTGCCCAC 290 489 338 Antisense
GATGCCGACATTTTGGGCCTTCAAG 41 381 367 Antisense
CAGGCCGACCATTTTGTTGAGCATT 605 209 397 Antisense
AAAGACGACGGGTGCGCTTTGTTCT 585 533 487 Antisense
ATATCAGACACTGCGATCTCGAATC 78 21 562 Antisense
AATATCGCTCAAATCGTGGCTCTTC 250 173 592 Antisense
GAGCTGATTCTAGTTGCCAATACGC 477 387 634 Antisense
GACGTGAAGCTGGCTCAACTGGCGA 327 377 685 Antisense
ACTGGCGATTCTGTTCGCATCGATT 279 97 702 Antisense
TGAGCCGAATTCCAAGGTCTACGAT 235 569 792 Antisense
Sequence Source Affymetrix Proprietary Database