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[180187_at]

Description F29A7.5 /REP_DB=WormBase Gene ID /WP=CE09776 /TR=O16205 /GB=AAB65275.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 6.3
(-2.9)
A 		6.1
(-3)
A 		9.2
(-2.1)
A 		26.6
(3)
A 		21
B 9.2
(0.7)
A 		6.3
(-1.6)
A 		12
(3)
A 		4.6
(-3)
A 		7
C 8.4
(-2)
A 		15.5
(-0.2)
A 		4.6
(-3)
A 		27.8
(3)
A 		23
avr 8
(-3) 		9.3
(-2.3) 		8.6
(-2.7) 		19.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 8
(-2.2)
A 		2.2
(-3)
A 		44.7
(3)
A 		2.4
(-3)
A 		2.9
(-2.9)
A 		6.6
(-2.4)
A 		43
B 14.3
(3)
A 		5.3
(-1.4)
A 		2
(-3)
A 		6.5
(-0.8)
A 		4.1
(-2)
A 		2.2
(-2.9)
A 		12
C 1.8
(-3)
A 		4.9
(-0.6)
A 		1.8
(-3)
A 		9.6
(3)
A 		5.4
(-0.2)
A 		3.5
(-1.7)
A 		8
avr 8
(-1.1) 		4.1
(-3) 		16.2
(3) 		6.2
(-2) 		4.1
(-3) 		4.1
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.3
(-0.7)
A 		1.3
(-3)
A 		2.4
(-0.5)
A 		3.9
(3)
A 		3
B 2.9
(3)
A 		1.6
(-1.1)
A 		2.8
(2.7)
A 		1
(-3)
A 		2
C 2.8
(-0.7)
A 		4.5
(2.6)
A 		1.6
(-3)
A 		4.7
(3)
A 		3
avr 2.7
(-0.3) 		2.5
(-1.7) 		2.3
(-3) 		3.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		0.8
(-2.9)
A 		9.7
(3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		1.6
(-2.3)
A 		9
B 5
(3)
A 		1.8
(-1.3)
A 		0.5
(-3)
A 		1.7
(-1.4)
A 		1.7
(-1.4)
A 		0.8
(-2.6)
A 		5
C 0.7
(-2.1)
A 		1.5
(1.3)
A 		0.5
(-3)
A 		1.9
(3)
A 		1.8
(2.6)
A 		1.2
(-0)
A 		1
avr 2.4
(-0) 		1.4
(-2.5) 		3.6
(3) 		1.4
(-2.5) 		1.5
(-2.3) 		1.2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4862
Sequence Type Exemplar sequence
Representative Public ID F29A7.5 NCBI
Target Description F29A7.5 /REP_DB=WormBase Gene ID /WP=CE09776 /TR=O16205 /GB=AAB65275.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061946 NCBI Caenorhabditis elegans F29A7.5 (F29A7.5) mRNA, complete cds. 11/11 None
F29A7.5 ENSEMBL cdna:known chromosome:CEL140:II:2747393:2747728:-1 gene:F29A7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2747391-2747727(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29A7.5
Entrez Gene 185105 Entrez gene
SwissProt O16205 EMBL-EBI
WormBase CE09776 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65275 Hypothetical protein F29A7.5 [Caenorhabditis elegans] ref|NP_494347.1| F29A7.5 [Caenorhabditis elegans] 3.0E-37
Sequence
Target Sequence 
>C. ELEGANS:180187_AT
tcggctgctacgtaccgtaagctgacgtctgctaatctcctggaccccgttagatgtcgg
ctgctcatttcccggaaccgatgtagagtgactggagttaaagttccgaatcctctgaaa
aaagtatctaattttttttggcgttacagagcacctcaggcagctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCTGCTACGTACCGTAAGCTGA 305 605 16 Antisense
CGTACCGTAAGCTGACGTCTGCTAA 462 203 26 Antisense
TAAGCTGACGTCTGCTAATCTCCTG 438 637 33 Antisense
CCGTTAGATGTCGGCTGCTCATTTC 10 265 62 Antisense
TGCTCATTTCCCGGAACCGATGTAG 586 579 77 Antisense
GGAACCGATGTAGAGTGACTGGAGT 525 527 89 Antisense
GGAGTTAAAGTTCCGAATCCTCTGA 471 515 109 Antisense
TCCGAATCCTCTGAAAAAAGTATCT 639 589 120 Antisense
TATCTAATTTTTTTTGGCGTTACAG 39 651 140 Antisense
TTTTTGGCGTTACAGAGCACCTCAG 617 653 150 Antisense
GTTACAGAGCACCTCAGGCAGCTCC 334 445 158 Antisense
Sequence Source Affymetrix Proprietary Database