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[180186_s_at] --- /// 7TM receptor

Description F57A10.1 /REP_DB=WormBase Gene ID /WP=CE16147 /TR=O17896 /GB=CAB09419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 6.9
(-2.1)
A 		3.8
(-3)
A 		6.1
(-2.3)
A 		23.4
(3)
A 		20
B 27
(-0.3)
A 		33
(0.6)
A 		8.5
(-3)
A 		49.7
(3)
A 		41
C 3.8
(-3)
A 		22.8
(-1.5)
A 		4.6
(-2.9)
A 		77.7
(3)
A 		74
avr 12.6
(-2.2) 		19.9
(-1.2) 		6.4
(-3) 		50.3
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.1
(-3)
A 		8
(-2.4)
A 		17.1
(-0.7)
A 		6
(-2.8)
A 		35.8
(3)
A 		6.8
(-2.7)
A 		31
B 28.3
(2)
A 		33.7
(3)
A 		7.5
(-1.9)
A 		4.6
(-2.4)
A 		1.4
(-3)
A 		22.3
(0.9)
A 		32
C 4.1
(-2.5)
A 		37
(3)
A 		23.2
(0.7)
A 		34.7
(2.6)
A 		1.4
(-3)
A 		21.9
(0.5)
A 		36
avr 12.5
(-3) 		26.2
(3) 		15.9
(-1.5) 		15.1
(-1.9) 		12.9
(-2.8) 		17
(-1) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.5
(0.9)
A 		0.8
(-3)
A 		1.6
(-1.2)
A 		3.4
(3)
A 		3
B 8.6
(1.6)
A 		8.2
(1.3)
A 		2
(-3)
A 		10.6
(3)
A 		9
C 1.2
(-3)
A 		6.5
(-0.3)
A 		1.6
(-2.8)
A 		13.1
(3)
A 		12
avr 4.1
(-1) 		5.2
(-0.1) 		1.7
(-3) 		9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-3)
A 		2.9
(-1.8)
A 		3.7
(-1.3)
A 		1.5
(-2.6)
A 		10.8
(3)
A 		1.7
(-2.5)
A 		10
B 9.8
(2.2)
A 		11.2
(3)
A 		1.8
(-2.3)
A 		1.2
(-2.7)
A 		0.6
(-3)
A 		8.3
(1.4)
A 		11
C 1.5
(-2.4)
A 		11.3
(3)
A 		5.9
(-0)
A 		7
(0.6)
A 		0.5
(-3)
A 		7.3
(0.8)
A 		11
avr 4.1
(-2) 		8.5
(3) 		3.8
(-2.3) 		3.2
(-3) 		4
(-2.1) 		5.8
(-0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180186_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14544
Sequence Type Exemplar sequence
Representative Public ID F57A10.1 NCBI
Target Description F57A10.1 /REP_DB=WormBase Gene ID /WP=CE16147 /TR=O17896 /GB=CAB09419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074525(11), NM_074524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074525 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-9) (str-9) mRNA, complete cds. 11/11 A 
NM_074524 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-8) (str-8) mRNA, complete cds. 11/11 A 
SNAP00000005217 ENSEMBL cdna:SNAP chromosome:CEL140:V:15761358:15769769:1 10/11 None
GENEFINDER00000005226 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15761358:15763001:1 11/11 None
SNAP00000041595 ENSEMBL cdna:SNAP chromosome:CEL140:V:15757615:15758978:1 11/11 None
GENEFINDER00000041602 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15755900:15758826:1 11/11 None
T23D5.11 ENSEMBL cdna:known chromosome:CEL140:V:15757615:15758978:1 gene:T23D5.11 11/11 A 
F57A10.1 ENSEMBL cdna:known chromosome:CEL140:V:15761358:15763001:1 gene:F57A10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15761357-15763001(+) 100.0 100.0
Public Domain and Genome References
Gene Title
7TM receptor
Gene Symbol str-9
str-8
Ensembl T23D5.11
F57A10.1
Entrez Gene 186433 Entrez gene
188790 Entrez gene
SwissProt O17896 EMBL-EBI
O45802 EMBL-EBI
WormBase CE16147 Wormbase
CE16451 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 0.0
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 0.0
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 1.0E-174
blast CAE66307 Hypothetical protein CBG11557 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.9E-22
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.1E-17
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506926.1 6 15-37,49-71,96-118,139-161,202-224,251-273
NP_506925.1 7 4-21,34-56,81-103,124-146,190-212,233-255,270-292
T23D5.11 7 4-21,34-56,81-103,124-146,190-212,233-255,270-292
F57A10.1 6 15-37,49-71,96-118,139-161,202-224,251-273
SNAP00000005217 5 15-37,49-71,96-118,139-161,202-224
GENEFINDER00000005226 6 15-37,49-71,96-118,139-161,202-224,251-273
SNAP00000041595 7 4-21,34-56,81-103,124-146,190-212,233-255,270-292
GENEFINDER00000041602 14 21-43,68-90,111-130,145-164,225-247,257-279,305-327,331-353,366-388,413-435,456-478,522-544,565-587,602-624
Sequence
Target Sequence 
>C. ELEGANS:180186_S_AT
tattactcattcttcggagtcctatgggcatttgcagttgggcatttctttgcgatggat
gacttcggaagagaataccttggtggggagatacttcttcgttacgagaggaacatcaca
gatatccctgtgcttggcctgattgcctatgaaggtaatagcatccgctggaggaatgtc
tatgggctctctctaatgacattgatctccacaattcaatactcggttatattgatttgt
gggcatcaaatgtatcatggaatgcgcgccaaactctccgtcctatccgcccaaaaccgt
cgccttcataagcaattcttcagagccctcgtgatacagatcactgcgcccacaatcata
ctgttctgtccagtcttcttcatgatctatgctccatttgcagacttggaaatgagcttc
ccgtcttgtataattcagagcggcttcacagtatacccagctctcgattcaattatcatg
atgagctgtgtttctgagtatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTACTCATTCTTCGGAGTCCTAT 538 663 439 Antisense
TCTTCGGAGTCCTATGGGCATTTGC 300 617 449 Antisense
GGGCATTTGCAGTTGGGCATTTCTT 256 493 464 Antisense
GGGCATTTCTTTGCGATGGATGACT 476 493 478 Antisense
GGTGGGGAGATACTTCTTCGTTACG 247 499 520 Antisense
CACAGATATCCCTGTGCTTGGCCTG 227 185 555 Antisense
GCTTGGCCTGATTGCCTATGAAGGT 95 307 570 Antisense
GAAGGTAATAGCATCCGCTGGAGGA 277 333 589 Antisense
GGAGGAATGTCTATGGGCTCTCTCT 270 515 608 Antisense
TGGGCTCTCTCTAATGACATTGATC 145 555 621 Antisense
TGATGAGCTGTGTTTCTGAGTATGG 692 565 917 Antisense
Sequence Source Affymetrix Proprietary Database