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[180185_at]

Description F57A10.1 /REP_DB=WormBase Gene ID /WP=CE16147 /TR=O17896 /GB=CAB09419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 09      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 63.9
(-3)
A 		78.8
(-2.6)
A 		72.2
(-2.8)
A 		292.1
(3)
P 		228
B 3.7
(-3)
A 		85.7
(-0.7)
A 		68.1
(-1.2)
A 		217.2
(3)
P 		214
C 66.1
(-2.8)
A 		98.2
(-1.5)
A 		61.9
(-3)
A 		207.2
(3)
P 		145
avr 44.6
(-3) 		87.6
(-1.7) 		67.4
(-2.3) 		238.8
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 45.8
(-0.6)
A 		62.3
(0.6)
A 		63.5
(0.6)
M 		12.5
(-3)
A 		96.6
(3)
P 		37.6
(-1.2)
A 		84
B 42.6
(2.2)
A 		47.7
(3)
A 		11.7
(-2.8)
A 		30.4
(0.2)
A 		10.4
(-3)
A 		20.8
(-1.3)
A 		37
C 47.7
(0.5)
A 		50.1
(0.7)
A 		79.5
(3)
A 		4
(-3)
A 		9.8
(-2.5)
A 		3.6
(-3)
A 		76
avr 45.4
(1.7) 		53.4
(3) 		51.6
(2.7) 		15.6
(-3) 		38.9
(0.7) 		20.7
(-2.2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 23.3
(-1.6)
A 		17.1
(-3)
A 		18.9
(-2.6)
A 		42.8
(3)
P 		26
B 1.2
(-3)
A 		21.2
(-0.3)
A 		15.8
(-1.1)
A 		46.3
(3)
P 		45
C 21.9
(-2.9)
A 		28.2
(-0)
A 		21.6
(-3)
A 		34.9
(3)
P 		13
avr 15.5
(-3) 		22.2
(-1.4) 		18.8
(-2.2) 		41.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 8.4
(-1.8)
A 		22.2
(1.4)
A 		13.8
(-0.6)
M 		3.2
(-3)
A 		29.2
(3)
P 		9.1
(-1.6)
A 		26
B 14.8
(2.5)
A 		15.9
(3)
A 		2.8
(-3)
A 		8
(-0.6)
A 		4.2
(-2.4)
A 		7.8
(-0.7)
A 		13
C 17.7
(2.2)
A 		15.3
(1.5)
A 		20.2
(3)
A 		0.8
(-3)
A 		3.2
(-2.3)
A 		1.2
(-2.9)
A 		19
avr 13.6
(1.2) 		17.8
(3) 		12.3
(0.6) 		4
(-3) 		12.2
(0.6) 		6
(-2.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14544
Sequence Type Exemplar sequence
Representative Public ID F57A10.1 NCBI
Target Description F57A10.1 /REP_DB=WormBase Gene ID /WP=CE16147 /TR=O17896 /GB=CAB09419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074525 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-9) (str-9) mRNA, complete cds. 11/11 A 
GENEFINDER00000005226 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15761358:15763001:1 11/11 None
F57A10.1 ENSEMBL cdna:known chromosome:CEL140:V:15761358:15763001:1 gene:F57A10.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005217 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15761357-15763001(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-9
Ensembl F57A10.1
Entrez Gene 186433 Entrez gene
SwissProt O17896 EMBL-EBI
WormBase CE16147 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 0.0
blast CAE66307 Hypothetical protein CBG11557 [Caenorhabditis briggsae] 1.0E-173
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 1.0E-165
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506926.1 6 15-37,49-71,96-118,139-161,202-224,251-273
F57A10.1 6 15-37,49-71,96-118,139-161,202-224,251-273
GENEFINDER00000005226 6 15-37,49-71,96-118,139-161,202-224,251-273
Sequence
Target Sequence 
>C. ELEGANS:180185_AT
gatctccacaattcaatactcggttatattgatttgtgggcatcaaatgtatcatggaat
gcgcgccaaactctccgtcctatccgcccaaaaccgtcgccttcataagcaattcttcag
agccctcgtgatacagatcactgcgcccacaatcatactgttctgtccagtcttcttcat
gatctatgctccatttgcagacttggaaatgagcttcccgtcttgtataattcagagcgg
cttcacagtatacccagctctcgattcaattatcatgatgagctgtgtttctgagtatgg
tagagcgttgaaaaagctaatctggaacactcggcaaaagtacacagtaaggtctccggg
gccggcggcggacgaaagtaaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCCACAATTCAATACTCGGTT 300 419 642 Antisense
TGTATCATGGAATGCGCGCCAAACT 410 559 689 Antisense
AAACCGTCGCCTTCATAAGCAATTC 64 127 732 Antisense
AATTCTTCAGAGCCCTCGTGATACA 544 175 752 Antisense
TCGTGATACAGATCACTGCGCCCAC 664 605 767 Antisense
GATCTATGCTCCATTTGCAGACTTG 14 421 822 Antisense
TGAGCTTCCCGTCTTGTATAATTCA 69 567 851 Antisense
TCAGAGCGGCTTCACAGTATACCCA 631 621 873 Antisense
AGCTCTCGATTCAATTATCATGATG 529 79 897 Antisense
AAGCTAATCTGGAACACTCGGCAAA 129 151 955 Antisense
GCCGGCGGCGGACGAAAGTAAAGAG 278 281 1002 Antisense
Sequence Source Affymetrix Proprietary Database