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[180184_at]

Description T02G5.3 /REP_DB=WormBase Gene ID /WP=CE04855 /TR=Q22107 /GB=AAA82404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 46.9
(-1.1)
A 		33.4
(-2.2)
A 		22.6
(-3)
A 		101.3
(3)
P 		79
B 31.1
(-2.9)
A 		30
(-3)
A 		31.1
(-2.9)
A 		76.9
(3)
A 		47
C 64.3
(3)
A 		45.8
(-1.5)
A 		39.5
(-3)
A 		43.1
(-2.1)
A 		25
avr 47.4
(-0.7) 		36.4
(-2.3) 		31.1
(-3) 		73.8
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 101.9
(3)
A 		37.6
(-1.5)
A 		56.1
(-0.2)
P 		50.2
(-0.6)
A 		40.3
(-1.3)
A 		16.7
(-3)
A 		85
B 104.5
(1.4)
A 		53.3
(-1.5)
M 		133.3
(3)
A 		30.4
(-2.8)
A 		26.5
(-3)
A 		33.3
(-2.6)
A 		107
C 24.5
(-0.5)
A 		52.7
(3)
P 		41
(1.5)
A 		34.6
(0.7)
A 		4.7
(-3)
A 		33.4
(0.6)
A 		48
avr 77
(3) 		47.9
(-0.3) 		76.8
(3) 		38.4
(-1.4) 		23.8
(-3) 		27.8
(-2.5) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 17.1
(3)
A 		7.2
(-2.3)
A 		5.9
(-3)
A 		14.8
(1.8)
P 		11
B 9.9
(-1.2)
A 		7.4
(-2.9)
A 		7.2
(-3)
A 		16.4
(3)
A 		9
C 21.3
(3)
A 		13.2
(-0.5)
A 		13.8
(-0.2)
A 		7.3
(-3)
A 		14
avr 16.1
(3) 		9.3
(-2.7) 		9
(-3) 		12.8
(0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 18.8
(3)
A 		13.4
(0.8)
A 		12.2
(0.3)
P 		12.7
(0.5)
A 		12.2
(0.3)
A 		4.1
(-3)
A 		15
B 36.4
(3)
A 		17.7
(-1)
M 		32.4
(2.2)
A 		8.1
(-3)
A 		10.8
(-2.4)
A 		12.4
(-2.1)
A 		28
C 9.1
(0.1)
A 		16.1
(3)
P 		10.4
(0.7)
A 		7
(-0.7)
A 		1.5
(-3)
A 		11.2
(1)
A 		15
avr 21.4
(3) 		15.7
(0.4) 		18.3
(1.6) 		9.3
(-2.5) 		8.2
(-3) 		9.2
(-2.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4688
Sequence Type Exemplar sequence
Representative Public ID T02G5.3 NCBI
Target Description T02G5.3 /REP_DB=WormBase Gene ID /WP=CE04855 /TR=Q22107 /GB=AAA82404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063061 NCBI Caenorhabditis elegans T02G5.3 (T02G5.3) mRNA, complete cds. 11/11 None
T02G5.3 ENSEMBL cdna:known chromosome:CEL140:II:7094129:7095236:1 gene:T02G5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014290 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014304 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7094124-7095232(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G5.3
Entrez Gene 187991 Entrez gene
SwissProt Q22107 EMBL-EBI
WormBase CE04855 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495462 T02G5.3 [Caenorhabditis elegans] gb|AAA82404.1| Hypothetical protein T02G5.3 [Caenorhabditis elegans] 1.0E-132
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495462.1 1 197-219
T02G5.3 1 197-219
Sequence
Target Sequence 
>C. ELEGANS:180184_AT
gactcaggtcaacattaagcaagcatatacgattttgaattgttccggtagaaatgtgac
atcagctcatctattgaaacagtgggagtttcttaatgaaaaaatagctgtagatcgtct
ctatgacatatacataaaagccgaagaagttgtgttggaaggtcatgaatacgagaaagc
agtgagaacaaaaacattgaaattggatgacattttgggttcagttaaagatggatctct
tgttaataaacaatatctggaaattattattaatgaatttacaagaagtgatggatatgt
tgatattggagcattactcgatacggcaactcaatctaaagttgatattgtgaacaagct
attagatataaaccaagaaatgggcggagcctgtattgatattttctgggtcatagttag
acatacaagatttgaaaaaacggcctcaaatctcgaacgctctagagcgcgctctgagat
taaataccagaacagactccgcctatatcttggtttttgcgtttttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCAGGTCAACATTAAGCAAGCA 373 373 105 Antisense
TACGATTTTGAATTGTTCCGGTAGA 358 625 132 Antisense
GAAATGTGACATCAGCTCATCTATT 603 361 155 Antisense
ATAGCTGTAGATCGTCTCTATGACA 314 23 208 Antisense
GCATTACTCGATACGGCAACTCAAT 615 307 415 Antisense
GGGCGGAGCCTGTATTGATATTTTC 353 493 486 Antisense
AAAACGGCCTCAAATCTCGAACGCT 209 131 541 Antisense
CTCGAACGCTCTAGAGCGCGCTCTG 135 233 556 Antisense
GAGCGCGCTCTGAGATTAAATACCA 251 387 569 Antisense
TAAATACCAGAACAGACTCCGCCTA 680 639 585 Antisense
TATATCTTGGTTTTTGCGTTTTTGC 463 661 608 Antisense
Sequence Source Affymetrix Proprietary Database