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[180183_at]

Description T22F3.7 /REP_DB=WormBase Gene ID /WP=CE13974 /TR=Q94304 /GB=AAB18310.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 115.5
(3)
P 		23.1
(-2)
A 		4.9
(-3)
A 		83.9
(1.3)
A 		111
B 82.1
(3)
P 		30.7
(-1.8)
A 		39.4
(-1)
A 		18.5
(-3)
A 		64
C 118.9
(3)
P 		55.6
(-2.1)
A 		44.8
(-3)
A 		48
(-2.7)
A 		74
avr 105.5
(3) 		36.5
(-2.5) 		29.7
(-3) 		50.1
(-1.4) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 105.1
(3)
A 		59
(-1.1)
A 		83.3
(1.1)
P 		70.2
(-0.1)
M 		55.8
(-1.4)
P 		37.8
(-3)
A 		67
B 104.6
(3)
P 		89.2
(1.7)
P 		45
(-2.1)
A 		83
(1.2)
P 		34
(-3)
A 		48.8
(-1.7)
A 		71
C 100.6
(3)
P 		66.5
(0.1)
A 		59.4
(-0.5)
A 		77.8
(1.1)
A 		29.6
(-3)
A 		56.5
(-0.7)
A 		71
avr 103.4
(3) 		71.6
(-0) 		62.6
(-0.8) 		77
(0.5) 		39.8
(-3) 		47.7
(-2.3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 42.1
(3)
P 		5
(-2.5)
A 		1.3
(-3)
A 		12.3
(-1.4)
A 		41
B 26.2
(3)
P 		7.6
(-2)
A 		9.1
(-1.6)
A 		3.9
(-3)
A 		22
C 39.4
(3)
P 		16
(-1.5)
A 		15.6
(-1.6)
A 		8.1
(-3)
A 		31
avr 35.9
(3) 		9.5
(-2.7) 		8.7
(-2.9) 		8.1
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 19.4
(2.2)
A 		21
(3)
A 		18.1
(1.5)
P 		17.8
(1.4)
M 		16.8
(0.9)
P 		9.2
(-3)
A 		12
B 36.4
(3)
P 		29.7
(1.4)
P 		10.9
(-3)
A 		22
(-0.4)
P 		13.8
(-2.3)
A 		18.2
(-1.3)
A 		26
C 37.3
(3)
P 		20.3
(-0.7)
A 		15.1
(-1.8)
A 		15.7
(-1.7)
A 		9.6
(-3)
A 		18.9
(-1)
A 		28
avr 31
(3) 		23.7
(0.5) 		14.7
(-2.6) 		18.5
(-1.3) 		13.4
(-3) 		15.4
(-2.3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15409
Sequence Type Exemplar sequence
Representative Public ID T22F3.7 NCBI
Target Description T22F3.7 /REP_DB=WormBase Gene ID /WP=CE13974 /TR=Q94304 /GB=AAB18310.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071611 NCBI Caenorhabditis elegans T22F3.7 (T22F3.7) mRNA, complete cds. 11/11 None
SNAP00000034229 ENSEMBL cdna:SNAP chromosome:CEL140:V:3597568:3600031:-1 9/11 None
GENEFINDER00000034236 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3595006:3600407:-1 10/11 None
T22F3.7 ENSEMBL cdna:known chromosome:CEL140:V:3597568:3600407:-1 gene:T22F3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3597567-3600407(-) 98.44 100.0
Public Domain and Genome References
Gene Title
Ensembl T22F3.7
Entrez Gene 188751 Entrez gene
SwissProt Q94304 EMBL-EBI
WormBase CE13974 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18310 Hypothetical protein T22F3.7 [Caenorhabditis elegans] ref|NP_504012.1| T22F3.7 [Caenorhabditis elegans] 0.0
blast AAB18311 Hypothetical protein T22F3.8 [Caenorhabditis elegans] ref|NP_504013.1| T22F3.8 [Caenorhabditis elegans] 0.0
blast AAB18311 Hypothetical protein T22F3.8 [Caenorhabditis elegans] ref|NP_504013.1| T22F3.8 [Caenorhabditis elegans] 1.0E-177
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 1.0E-166
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 1.0E-143
blast AAB18310 Hypothetical protein T22F3.7 [Caenorhabditis elegans] ref|NP_504012.1| T22F3.7 [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.7E-118
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504012.1 11 44-66,95-117,124-143,148-170,183-205,215-234,278-300,315-337,349-371,375-397,406-428
T22F3.7 11 44-66,95-117,124-143,148-170,183-205,215-234,278-300,315-337,349-371,375-397,406-428
SNAP00000034229 7 41-63,73-92,135-157,172-194,207-227,242-264,273-295
GENEFINDER00000034236 19 39-61,95-117,121-143,150-172,182-204,217-236,282-304,317-334,349-371,378-397,412-434,443-465,510-532,544-566,581-603,616-638,643-665,686-708,718-740
Sequence
Target Sequence 
>C. ELEGANS:180183_AT
aactcgtaactagcccggtgattctttgtgtttgggcaaatgcatttttcgagctaaccg
ctgcaataatgttctcaacctatattccactatatttacatgaagttctgaaattcggag
tcactgaaactggattttatgcgtctttaattcttggcatatccttgccggttcgatttg
ttttcgcgcttatcagtgataagttgaaatttgtcagtgaaattttcaaaatccacactt
tcaacacaatttccgtcggactatccggattgttttttgcttgtatcggacaattctcgc
acgttgttattaccgcgattcaatggatgaagtgtttggctctatttgtagcgccggctc
ttgtttccatttttgtccacgaggagtccaacaggctgcaatggatttgggtatttctga
tagttggtggcctaatgattattacaaatattgtggcattcttcattttaaccgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCGTAACTAGCCCGGTGATTCT 23 67 827 Antisense
GCATTTTTCGAGCTAACCGCTGCAA 227 307 868 Antisense
GCGTCTTTAATTCTTGGCATATCCT 624 289 967 Antisense
TTGCCGGTTCGATTTGTTTTCGCGC 473 699 991 Antisense
GACTATCCGGATTGTTTTTTGCTTG 455 371 1085 Antisense
TTGTATCGGACAATTCTCGCACGTT 42 709 1107 Antisense
GCACGTTGTTATTACCGCGATTCAA 243 315 1125 Antisense
TTTGGCTCTATTTGTAGCGCCGGCT 69 665 1161 Antisense
CTTGTTTCCATTTTTGTCCACGAGG 678 215 1186 Antisense
GTCCACGAGGAGTCCAACAGGCTGC 701 475 1201 Antisense
GTGGCATTCTTCATTTTAACCGATA 373 491 1279 Antisense
Sequence Source Affymetrix Proprietary Database