[Home] | [Total List]

[180182_at]

Description K03B4.4 /REP_DB=WormBase Gene ID /WP=CE07324 /TR=Q21171 /GB=AAA97995.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 95      6grp_total > 68      4grp_total > 04      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1680
1 2 3 4 range
A 1160.1
(-1.6)
P 		936.2
(-2.5)
P 		809.2
(-3)
P 		2341.4
(3)
P 		1532
B 1300
(-1.2)
P 		1049.7
(-2.1)
P 		801.3
(-3)
P 		2441
(3)
P 		1640
C 1212.9
(-0.7)
P 		775.2
(-2.9)
P 		760.9
(-3)
P 		1929.6
(3)
P 		1169
avr 1224.3
(-1.2) 		920.4
(-2.5) 		790.5
(-3) 		2237.3
(3) 		1447

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 927
1 2 3 4 5 6 range
A 606.3
(-0)
P 		366.8
(-2.5)
P 		542
(-0.7)
P 		313
(-3)
P 		701.6
(0.9)
P 		909.1
(3)
P 		596
B 647.4
(-1)
P 		708.9
(-0.5)
P 		406.4
(-3)
P 		560.4
(-1.7)
P 		651.8
(-1)
P 		1125.1
(3)
P 		719
C 533.9
(-2.6)
P 		601.9
(-2)
P 		650.1
(-1.6)
P 		536
(-2.5)
P 		478.5
(-3)
P 		1240.2
(3)
P 		762
avr 595.9
(-1.8) 		559.2
(-2.1) 		532.8
(-2.4) 		469.8
(-3) 		610.6
(-1.6) 		1091.5
(3) 		622
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 422.4
(3)
P 		203.2
(-3)
P 		211.5
(-2.8)
P 		342.7
(0.8)
P 		219
B 414.6
(1.1)
P 		259.2
(-1.7)
P 		185.7
(-3)
P 		520.2
(3)
P 		335
C 401.5
(3)
P 		222.9
(-3)
P 		265.2
(-1.6)
P 		325.4
(0.4)
P 		179
avr 412.8
(3) 		228.4
(-2.8) 		220.8
(-3) 		396.1
(2.5) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 111.8
(-1.6)
P 		130.4
(-0.8)
P 		118
(-1.4)
P 		79.4
(-3)
P 		211.7
(2.6)
P 		221.3
(3)
P 		142
B 225.3
(-0.6)
P 		236
(-0.4)
P 		98.7
(-3)
P 		148.4
(-2.1)
P 		264.8
(0.1)
P 		419.6
(3)
P 		321
C 197.9
(-1.2)
P 		183.6
(-1.5)
P 		165.5
(-1.9)
P 		107.8
(-3)
P 		154.8
(-2.1)
P 		415.2
(3)
P 		307
avr 178.3
(-1.3) 		183.3
(-1.2) 		127.4
(-2.6) 		111.9
(-3) 		210.4
(-0.5) 		352
(3) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180182_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15408
Sequence Type Exemplar sequence
Representative Public ID K03B4.4 NCBI
Target Description K03B4.4 /REP_DB=WormBase Gene ID /WP=CE07324 /TR=Q21171 /GB=AAA97995.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071858 NCBI Caenorhabditis elegans K03B4.4 (K03B4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000000724 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4683742:4684774:1 11/11 None
K03B4.4 ENSEMBL cdna:known chromosome:CEL140:V:4683742:4684774:1 gene:K03B4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4683741-4684774(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03B4.4
Entrez Gene 186919 Entrez gene
SwissProt Q21171 EMBL-EBI
WormBase CE07324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97995 Hypothetical protein K03B4.4 [Caenorhabditis elegans] ref|NP_504259.1| K03B4.4 [Caenorhabditis elegans] 3.0E-36
blast CAE64169 Hypothetical protein CBG08791 [Caenorhabditis briggsae] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:180182_AT
cctcgctactttcgatgtcacatcagcccaatcacgcatcgatcgcagcgccgcatggtt
taagccgttgcccaacgtccgttcaccacaatattccaggtctcggatcggtggatctcg
tcttcttccacgtcgcatgtaccgtagtcttcctcaaaatgactatcagggaatgtggga
taaactaatcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCGCTACTTTCGATGTCACATCA 452 267 54 Antisense
TTCGATGTCACATCAGCCCAATCAC 23 697 64 Antisense
GATCGCAGCGCCGCATGGTTTAAGC 467 383 94 Antisense
GTCCGTTCACCACAATATTCCAGGT 687 473 130 Antisense
TCACCACAATATTCCAGGTCTCGGA 552 625 136 Antisense
CAATATTCCAGGTCTCGGATCGGTG 426 179 142 Antisense
TATTCCAGGTCTCGGATCGGTGGAT 558 659 145 Antisense
ATGTACCGTAGTCTTCCTCAAAATG 569 47 190 Antisense
GTCTTCCTCAAAATGACTATCAGGG 270 469 200 Antisense
AAATGACTATCAGGGAATGTGGGAT 492 117 210 Antisense
GGGAATGTGGGATAAACTAATCGAT 554 493 222 Antisense
Sequence Source Affymetrix Proprietary Database