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[180181_at]

Description T05B4.9 /REP_DB=WormBase Gene ID /WP=CE13209 /TR=O16418 /GB=AAC69059.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 35      6grp_total > 18      4grp_total > 44      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 115.8
(0.5)
P 		133.3
(3)
P 		91.1
(-3)
P 		100.3
(-1.7)
P 		42
B 147.2
(2.2)
P 		158.8
(3)
P 		104.8
(-0.9)
A 		76.7
(-3)
A 		82
C 142.9
(3)
M 		141
(2.7)
P 		111.1
(-1.5)
A 		100.2
(-3)
A 		43
avr 135.3
(2) 		144.4
(3) 		102.3
(-1.9) 		92.4
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 217
(3)
P 		95
(-0.7)
P 		69.8
(-1.4)
A 		16.9
(-3)
A 		113.3
(-0.1)
M 		98.4
(-0.6)
P 		200
B 237
(3)
P 		88.4
(-1.9)
A 		54
(-3)
A 		69.1
(-2.5)
A 		64.4
(-2.7)
A 		59.6
(-2.8)
A 		183
C 175.6
(3)
P 		94.9
(-0.8)
M 		78.5
(-1.6)
A 		120.9
(0.4)
A 		56.8
(-2.6)
A 		47.7
(-3)
A 		128
avr 209.9
(3) 		92.8
(-1.9) 		67.4
(-3) 		69
(-2.9) 		78.2
(-2.5) 		68.6
(-2.9) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 42.2
(3)
P 		28.9
(0.1)
P 		23.8
(-1)
P 		14.7
(-3)
P 		28
B 46.9
(3)
P 		39.2
(1.5)
P 		24.3
(-1.4)
A 		16.4
(-3)
A 		31
C 47.3
(3)
M 		40.5
(1.7)
P 		38.7
(1.3)
A 		16.9
(-3)
A 		30
avr 45.5
(3) 		36.2
(1.1) 		28.9
(-0.4) 		16
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 40
(3)
P 		33.8
(2)
P 		15.2
(-1.2)
A 		4.3
(-3)
A 		34.2
(2)
M 		24
(0.3)
P 		36
B 82.5
(3)
P 		29.4
(-1.6)
A 		13.1
(-3)
A 		18.3
(-2.6)
A 		26.2
(-1.9)
A 		22.2
(-2.2)
A 		69
C 65.1
(3)
P 		29
(-1.4)
M 		20
(-2.5)
A 		24.3
(-2)
A 		18.4
(-2.7)
A 		16
(-3)
A 		49
avr 62.5
(3) 		30.7
(-1.1) 		16.1
(-2.9) 		15.6
(-3) 		26.3
(-1.6) 		20.7
(-2.3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180181_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15072
Sequence Type Exemplar sequence
Representative Public ID T05B4.9 NCBI
Target Description T05B4.9 /REP_DB=WormBase Gene ID /WP=CE13209 /TR=O16418 /GB=AAC69059.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071745 NCBI Caenorhabditis elegans T05B4.9 (T05B4.9) mRNA, complete cds. 11/11 None
SNAP00000031062 ENSEMBL cdna:SNAP chromosome:CEL140:V:4117398:4118245:-1 11/11 None
GENEFINDER00000031077 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4117398:4118245:-1 11/11 None
T05B4.9 ENSEMBL cdna:known chromosome:CEL140:V:4117398:4118245:-1 gene:T05B4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4117397-4118245(-) 100.0 100.0
chrV:4115004-4120542(-) 91.5 91.5
Public Domain and Genome References
Gene Title
Ensembl T05B4.9
Entrez Gene 188105 Entrez gene
SwissProt O16418 EMBL-EBI
WormBase CE13209 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69059 Hypothetical protein T05B4.9 [Caenorhabditis elegans] ref|NP_504146.1| T05B4.9 [Caenorhabditis elegans] 1.0E-139
blast AAC69053 Hypothetical protein T05B4.10 [Caenorhabditis elegans] ref|NP_504147.1| T05B4.10 [Caenorhabditis elegans] 1.0E-132
blast AAC69058 Hypothetical protein T05B4.8 [Caenorhabditis elegans] ref|NP_504145.1| T05B4.8 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.4E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.6E-13
Sequence
Target Sequence 
>C. ELEGANS:180181_AT
tctacccaaccactgataccttgggattcccagctcctggaaatgctgctggaagaccac
tggcttgctacaccactggttcagttacaccagctgcagtgattcaagacatgaagactg
ccgctgcgtccacttgcccaagaacatgtggactctgctgtcaaactgaagcttacaact
gccctaacgttgcttatcctcgtcttaactgtgcttctatcactctttctcaatgtaact
ccccagcctggagaacgatcattgccgctgattgcccatctgcttgtggattctgcaccc
aaggtggatgcgtcgatgctgtcaccaactgtggaactgatctgagcatctgccaaaaca
ttggaatgcaaagctttgttaacacttactgccagagaacatgtggaagatgcccatcaa
cgactgcatctggaagcgtgactgtaacatccggaacctgcacctcatacatcgctgaca
gctcctccaactgtgcctcctggtctaggaacggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACCCAACCACTGATACCTTGGG 559 613 179 Antisense
TGATACCTTGGGATTCCCAGCTCCT 91 563 192 Antisense
CGTCCACTTGCCCAAGAACATGTGG 178 245 305 Antisense
GCCCAAGAACATGTGGACTCTGCTG 156 287 314 Antisense
TGAAGCTTACAACTGCCCTAACGTT 335 573 345 Antisense
TTGTGGATTCTGCACCCAAGGTGGA 356 667 462 Antisense
CTGCACCCAAGGTGGATGCGTCGAT 164 237 471 Antisense
GCTGTCACCAACTGTGGAACTGATC 597 293 496 Antisense
TGCCCATCAACGACTGCATCTGGAA 529 583 589 Antisense
GACTGCATCTGGAAGCGTGACTGTA 683 373 600 Antisense
TGTGCCTCCTGGTCTAGGAACGGAT 708 551 670 Antisense
Sequence Source Affymetrix Proprietary Database