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[180180_at] 7TM chemoreceptor, srx family

Description F41F3.7 /REP_DB=WormBase Gene ID /WP=CE07221 /TR=Q20286 /GB=AAA97986.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 01      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 6.2
(-2.9)
A 		5.6
(-3)
A 		8.1
(-2.7)
A 		57.6
(3)
A 		52
B 8
(-2.5)
A 		4.5
(-3)
A 		14.2
(-1.6)
A 		44.9
(3)
A 		40
C 7.9
(0.1)
A 		5.2
(-1.4)
A 		2.4
(-3)
A 		12.9
(3)
A 		11
avr 7.4
(-2.6) 		5.1
(-3) 		8.2
(-2.4) 		38.5
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 12.9
(0.1)
A 		4.2
(-2.7)
A 		19.6
(2.3)
A 		21.7
(3)
A 		5.5
(-2.3)
A 		3.3
(-3)
A 		18
B 6.6
(-2.1)
A 		31.4
(3)
A 		8.4
(-1.7)
A 		2
(-3)
A 		3.2
(-2.8)
A 		3.6
(-2.7)
A 		29
C 9.7
(0.6)
A 		8.9
(0)
A 		4.8
(-3)
A 		12.9
(3)
A 		7.8
(-0.8)
A 		5.6
(-2.4)
A 		8
avr 9.7
(0.1) 		14.8
(3) 		10.9
(0.8) 		12.2
(1.5) 		5.5
(-2.3) 		4.2
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.3
(-2.1)
A 		1.2
(-3)
A 		2.1
(-2.3)
A 		8.4
(3)
A 		7
B 2.5
(-2)
A 		1.1
(-3)
A 		3.3
(-1.4)
A 		9.6
(3)
A 		9
C 2.6
(3)
A 		1.5
(-0.7)
A 		0.8
(-3)
A 		2.2
(1.7)
A 		2
avr 2.5
(-1.7) 		1.3
(-3) 		2.1
(-2.1) 		6.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.4
(-1)
A 		1.5
(-2.1)
A 		4.3
(1.5)
A 		5.5
(3)
A 		1.6
(-2)
A 		0.8
(-3)
A 		5
B 2.3
(-1.9)
A 		10.5
(3)
A 		2
(-2.1)
A 		0.5
(-3)
A 		1.3
(-2.5)
A 		1.3
(-2.5)
A 		10
C 3.6
(3)
A 		2.7
(0.8)
A 		1.2
(-3)
A 		2.6
(0.5)
A 		2.5
(0.3)
A 		1.9
(-1.3)
A 		2
avr 2.8
(-0.5) 		4.9
(3) 		2.5
(-1) 		2.9
(-0.3) 		1.8
(-2.2) 		1.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15071
Sequence Type Exemplar sequence
Representative Public ID F41F3.7 NCBI
Target Description F41F3.7 /REP_DB=WormBase Gene ID /WP=CE07221 /TR=Q20286 /GB=AAA97986.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071855(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071855 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-73) (srx-73) mRNA, complete cds. 10/11 None
GENEFINDER00000023072 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4658768:4664911:-1 10/11 None
F41F3.7 ENSEMBL cdna:known chromosome:CEL140:V:4663612:4664919:-1 gene:F41F3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023068 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4663611-4664919(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-73
Ensembl F41F3.7
Entrez Gene 185629 Entrez gene
WormBase CE38185 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504256 Serpentine Receptor, class X family member (srx-73) [Caenorhabditis elegans] 1.0E-176
blast AAZ91347 Serpentine receptor, class x protein 73 [Caenorhabditis elegans] 1.0E-158
blast AAA97985 Serpentine receptor, class x protein 74 [Caenorhabditis elegans] ref|NP_504255.2| Serpentine Receptor, class X family member (srx-74) [Caenorhabditis elegans] 1.0E-132
blast T29735 hypothetical protein F41F3.7 - Caenorhabditis elegans 1.0E-114
blast T29735 hypothetical protein F41F3.7 - Caenorhabditis elegans 1.0E-112
blast AAZ91347 Serpentine receptor, class x protein 73 [Caenorhabditis elegans] 1.0E-112
blast NP_504256 Serpentine Receptor, class X family member (srx-73) [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.9E-29
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 9.1E-45
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.9E-29
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.4E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504256.2 7 10-32,52-71,81-103,116-138,182-204,225-247,257-279
F41F3.7 4 15-37,50-72,116-138,190-207
GENEFINDER00000023072 7 15-37,49-71,114-136,187-204,247-269,607-629,685-707
Sequence
Target Sequence 
>C. ELEGANS:180180_AT
gatcttacaactatcttccaatatcactagaaacactgctcatactttcaactgtcaata
tctatgtggcaaatgatgttctaacgattttagttgcaattaatcgatttattgcaatgt
tcgccccgttctattatgacaaactttgcagtattaaagtcactgcggcatgtatctccc
tcatctacttgaatcgagtatatgcaactatgacaaaaagctacaatctttttgacggag
gctgcagaatttacacaagccttgaaacatttgcaactacatatgaagaccctagctgta
aaaaaacatcggacaatggattcagtagttttgacgtgcttttcggagcaattgggttcc
ttgggatagcacttattttgaatctttttacgttttccaagattttaaggttttatttgg
gcaagaatggacagagaagcaaggaaacttcaatgtcaattaggaaaaacattcggatgt
tttttcaaacagtgcttcaagattctctatttctgattgatgtattattcacatacaagt
tcagcactctgagcaaagcccgtatttggctcttcataagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTACAACTATCTTCCAATATC 688 417 20 Antisense
CACTGCTCATACTTTCAACTGTCAA 252 199 53 Antisense
TTCGCCCCGTTCTATTATGACAAAC 148 697 139 Antisense
AAAGTCACTGCGGCATGTATCTCCC 114 123 175 Antisense
ATCTCCCTCATCTACTTGAATCGAG 543 33 193 Antisense
GTAGTTTTGACGTGCTTTTCGGAGC 438 255 344 Antisense
TCGGAGCAATTGGGTTCCTTGGGAT 404 607 362 Antisense
GGTTCCTTGGGATAGCACTTATTTT 379 503 374 Antisense
AACAGTGCTTCAAGATTCTCTATTT 228 137 507 Antisense
TCAGCACTCTGAGCAAAGCCCGTAT 376 623 560 Antisense
GCCCGTATTTGGCTCTTCATAAGCA 260 285 577 Antisense
Sequence Source Affymetrix Proprietary Database