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[180179_at]

Description K06A5.8 /REP_DB=WormBase Gene ID /WP=CE26939 /TR=O44554 /GB=AAK21436.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 52.5
(3)
A 		4.4
(-2.9)
A 		3.7
(-3)
A 		39.3
(1.4)
A 		49
B 13.3
(-2.1)
A 		5.6
(-3)
A 		9
(-2.6)
A 		56.8
(3)
A 		51
C 34.6
(3)
A 		4.3
(-3)
A 		24.4
(1)
A 		22.2
(0.5)
A 		30
avr 33.5
(2) 		4.8
(-3) 		12.4
(-1.7) 		39.4
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 6.2
(-3)
A 		64.3
(3)
A 		12.1
(-2.4)
A 		63.9
(3)
A 		48.8
(1.4)
A 		60.2
(2.6)
A 		58
B 45.7
(3)
A 		14.8
(-1.7)
A 		13.7
(-1.9)
A 		43.4
(2.6)
A 		6.3
(-3)
A 		14.6
(-1.7)
A 		39
C 36
(-0.6)
A 		85.9
(3)
A 		2.7
(-3)
A 		11.2
(-2.4)
A 		16.5
(-2)
A 		4.1
(-2.9)
A 		83
avr 29.3
(-0.4) 		55
(3) 		9.5
(-3) 		39.5
(1) 		23.9
(-1.1) 		26.3
(-0.8) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.1
(3)
A 		1
(-3)
A 		1
(-3)
A 		5.7
(-1.4)
A 		18
B 4.3
(-1.4)
A 		1.4
(-3)
A 		2.1
(-2.6)
A 		12.1
(3)
A 		11
C 11.4
(3)
A 		1.2
(-3)
A 		8.5
(1.3)
A 		3.7
(-1.5)
A 		10
avr 11.6
(3) 		1.2
(-3) 		3.9
(-1.4) 		7.2
(0.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.1
(-3)
A 		22.9
(3)
A 		2.6
(-2.6)
A 		16.2
(1.2)
A 		14.7
(0.7)
A 		14.7
(0.7)
A 		22
B 15.9
(3)
A 		4.9
(-1.9)
A 		3.3
(-2.6)
A 		11.5
(1)
A 		2.5
(-3)
A 		5.5
(-1.7)
A 		13
C 13.4
(-0)
A 		26.2
(3)
A 		0.7
(-3)
A 		2.3
(-2.6)
A 		5.3
(-1.9)
A 		1.4
(-2.8)
A 		26
avr 10.1
(-0) 		18
(3) 		2.2
(-3) 		10
(-0) 		7.5
(-1) 		7.2
(-1.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1294
Sequence Type Exemplar sequence
Representative Public ID K06A5.8 NCBI
Target Description K06A5.8 /REP_DB=WormBase Gene ID /WP=CE26939 /TR=O44554 /GB=AAK21436.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059466, NM_170882, NM_059464, NM_059463
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000044602 ENSEMBL cdna:SNAP chromosome:CEL140:I:6484926:6487977:-1 None
K06A5.8d ENSEMBL cdna:known chromosome:CEL140:I:6482318:6495782:-1 gene:K06A5.8 A 
GENEFINDER00000044615 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6485049:6487982:-1 None
NM_059463 NCBI Caenorhabditis elegans K06A5.8b (K06A5.8) mRNA, complete cds. A 
K06A5.8b ENSEMBL cdna:known chromosome:CEL140:I:6484888:6497053:-1 gene:K06A5.8 A 
NM_059464 NCBI Caenorhabditis elegans K06A5.8a (K06A5.8) mRNA, complete cds. A 
K06A5.8a.2 ENSEMBL cdna:known chromosome:CEL140:I:6484936:6497117:-1 gene:K06A5.8 None
NM_170882 NCBI Caenorhabditis elegans K06A5.8c (K06A5.8) mRNA, complete cds. A 
K06A5.8a.1 ENSEMBL cdna:known chromosome:CEL140:I:6484936:6497081:-1 gene:K06A5.8 None
K06A5.8c ENSEMBL cdna:known chromosome:CEL140:I:6485250:6495220:-1 gene:K06A5.8 A 
NM_059466 NCBI Caenorhabditis elegans K06A5.8d (K06A5.8) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6484977-6487906(-) 100.0 100.0
Public Domain and Genome References
Ensembl K06A5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO12408 Hypothetical protein K06A5.8d [Caenorhabditis elegans] ref|NP_491867.2| K06A5.8d [Caenorhabditis elegans] 0.0
blast AAM81097 Hypothetical protein K06A5.8a [Caenorhabditis elegans] ref|NP_491865.2| K06A5.8a [Caenorhabditis elegans] 0.0
blast AAM81098 Hypothetical protein K06A5.8b [Caenorhabditis elegans] ref|NP_491864.2| K06A5.8b [Caenorhabditis elegans] 0.0
blast NP_740871 K06A5.8c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0013
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.0E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0013
Sequence
Target Sequence 
>C. ELEGANS:180179_AT
gtcacgaaattccatatcctaaactgtacagttaagaccatgatttaccataaaacattt
agcacattgtttcattcttttcgagaagacgagaaggtccaaaaatctggcagcctcgga
ctcccccccattcttggtctctatacgtggagtcaagccggaaatcagtttgtttcttgc
tcacaagataagactataaggttctgggatctccggcagcaaactgcagtgaatgtgata
tcacctggaaatgcatcaccagtgacatcagtctgtgtagatccaaatgggaaattatta
gtatcagggcatgaggacgcgtctgttgcattgtttgacatcggcggaaatcgaattttg
cagacattcaggtacttgcggtcctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACGAAATTCCATATCCTAAACT 668 455 751 Antisense
AGCACATTGTTTCATTCTTTTCGAG 441 77 811 Antisense
CAAAAATCTGGCAGCCTCGGACTCC 443 191 850 Antisense
CCCCATTCTTGGTCTCTATACGTGG 589 261 876 Antisense
GAAATCAGTTTGTTTCTTGCTCACA 279 363 911 Antisense
CTATAAGGTTCTGGGATCTCCGGCA 682 223 944 Antisense
GGATCTCCGGCAGCAAACTGCAGTG 688 511 957 Antisense
GCATCACCAGTGACATCAGTCTGTG 456 309 1003 Antisense
GCATGAGGACGCGTCTGTTGCATTG 636 309 1059 Antisense
GCATTGTTTGACATCGGCGGAAATC 375 305 1078 Antisense
GACATTCAGGTACTTGCGGTCCTTA 358 369 1113 Antisense
Sequence Source Affymetrix Proprietary Database