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[180178_at]

Description Y62H9A.2 /REP_DB=WormBase Gene ID /WP=CE19238 /TR=Q9XWT6 /GB=CAA21559.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 1.9
(-3)
A 		31.7
(-1.7)
A 		5.8
(-2.8)
A 		136
(3)
A 		134
B 6.1
(-2.4)
A 		4
(-2.8)
A 		2.9
(-3)
A 		33.6
(3)
A 		31
C 7.3
(-2.4)
A 		9
(-2.2)
A 		1
(-3)
A 		62.4
(3)
A 		61
avr 5.1
(-2.8) 		14.9
(-2.1) 		3.2
(-3) 		77.3
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 67.7
(3)
A 		3.9
(-2.9)
A 		7.6
(-2.5)
A 		2.7
(-3)
A 		11.5
(-2.2)
A 		3.4
(-2.9)
A 		65
B 3.1
(-3)
A 		4.4
(-2.8)
A 		7.1
(-2.3)
A 		39.8
(3)
A 		22
(0.1)
A 		5.8
(-2.6)
A 		37
C 4.2
(-2.3)
A 		17
(1.1)
A 		2.7
(-2.7)
A 		4.1
(-2.3)
A 		24.3
(3)
A 		1.5
(-3)
A 		23
avr 25
(3) 		8.4
(-1.7) 		5.8
(-2.4) 		15.5
(0.3) 		19.3
(1.4) 		3.6
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 0.7
(-3)
A 		6.9
(-1.1)
A 		1.5
(-2.8)
A 		19.9
(3)
A 		19
B 1.9
(-1.9)
A 		1
(-2.7)
A 		0.7
(-3)
A 		7.2
(3)
A 		7
C 2.4
(-1.8)
A 		2.6
(-1.6)
A 		0.3
(-3)
A 		10.5
(3)
A 		10
avr 1.7
(-2.5) 		3.5
(-1.6) 		0.8
(-3) 		12.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 12.5
(3)
A 		1.4
(-2.6)
A 		1.7
(-2.5)
A 		0.7
(-3)
A 		3.5
(-1.6)
A 		0.8
(-2.9)
A 		12
B 1.1
(-3)
A 		1.5
(-2.7)
A 		1.7
(-2.6)
A 		10.5
(3)
A 		8.9
(2)
A 		2.2
(-2.3)
A 		9
C 1.6
(-2.1)
A 		5.2
(0.8)
A 		0.7
(-2.8)
A 		0.8
(-2.8)
A 		7.9
(3)
A 		0.5
(-3)
A 		7
avr 5.1
(1.2) 		2.7
(-1.4) 		1.4
(-2.8) 		4
(-0) 		6.8
(3) 		1.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17002
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.2 NCBI
Target Description Y62H9A.2 /REP_DB=WormBase Gene ID /WP=CE19238 /TR=Q9XWT6 /GB=CAA21559.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077582(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077582 NCBI Caenorhabditis elegans Y62H9A.2 (Y62H9A.2) mRNA, complete cds. 11/11 None
SNAP00000025454 ENSEMBL cdna:SNAP chromosome:CEL140:X:11877339:11878117:-1 11/11 None
GENEFINDER00000025468 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11877339:11878117:-1 11/11 None
Y62H9A.2 ENSEMBL cdna:known chromosome:CEL140:X:11877339:11878117:-1 gene:Y62H9A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11877338-11878117(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.2
Entrez Gene 190460 Entrez gene
SwissProt Q9XWT6 EMBL-EBI
WormBase CE19238 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21559 Hypothetical protein Y62H9A.2 [Caenorhabditis elegans] ref|NP_509983.1| Y62H9A.2 [Caenorhabditis elegans] 1.0E-111
Sequence
Target Sequence 
>C. ELEGANS:180178_AT
tcggcttactcagggccaacaaaagagtgataataaaccttcactgatggaagatacacg
aatgagtgtctcaaaaatagttaataagaattctgatttcaaaaacaatttttcgtacga
taagagggaagccaaaaaatggacagcgttgcgagcagagtgtgaattgactattgagag
agtaaagtctcttgatcatattttatgcagaggaagttccaaaacggaccttgtttatgc
tctaaaacaatctgctcaaatctacactcgccgtgaagaaatgtttgaaattgttgattc
ttcaccacccagtatcgacaaacgtcggactcttgctctgttatgtgaaattcgaaattt
ggatgaagatagcattataggaaaaacaatgtcagctcttgatatggcaaacggtggtta
tcacaaaacgaaaatcctcgaaaatatgttagaagagaaggaaaaagaactaaagacaag
agagacggatgctcatgacttaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCTTACTCAGGGCCAACAAAAG 318 607 54 Antisense
GGACAGCGTTGCGAGCAGAGTGTGA 378 525 194 Antisense
CAAAACGGACCTTGTTTATGCTCTA 370 189 273 Antisense
TTATGCTCTAAAACAATCTGCTCAA 644 679 288 Antisense
CTCAAATCTACACTCGCCGTGAAGA 690 227 308 Antisense
TGAAATTGTTGATTCTTCACCACCC 84 573 339 Antisense
CACCACCCAGTATCGACAAACGTCG 593 199 356 Antisense
CGACAAACGTCGGACTCTTGCTCTG 500 251 369 Antisense
TCGGACTCTTGCTCTGTTATGTGAA 356 607 378 Antisense
GTCAGCTCTTGATATGGCAAACGGT 609 463 444 Antisense
GAGAGACGGATGCTCATGACTTACA 381 395 533 Antisense
Sequence Source Affymetrix Proprietary Database