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[180177_at]

Description C49G7.3 /REP_DB=WormBase Gene ID /WP=CE08861 /TR=O16226 /GB=AAK18898.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 05      6grp_total > 13      4grp_total > 52      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9201
1 2 3 4 range
A 8897.2
(2.9)
P
8993.8
(3)
P
7897.5
(2.2)
P
411.6
(-3)
P
8582
B 9612.7
(3)
P
8573.5
(2.3)
P
7094.4
(1.3)
P
511.4
(-3)
P
9101
C 8639.3
(3)
P
8098.8
(2.6)
P
6601.1
(1.5)
P
429
(-3)
P
8210
avr 9049.7
(3)
8555.4
(2.7)
7197.7
(1.7)
450.7
(-3)
8599

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6017
1 2 3 4 5 6 range
A 8828.7
(3)
P
7613.1
(1.8)
P
7622.3
(1.8)
P
7171.3
(1.3)
P
5371.9
(-0.5)
P
2825.3
(-3)
P
6003
B 8842.6
(3)
P
8031.2
(2.1)
P
6677.3
(0.7)
P
6523.6
(0.5)
P
5737.7
(-0.3)
P
3185.9
(-3)
P
5657
C 8316.2
(3)
P
7704.9
(2.3)
P
7723.4
(2.3)
P
7390.3
(1.9)
P
6528.7
(0.9)
P
3255.2
(-3)
P
5061
avr 8662.5
(3)
7783.1
(2.1)
7341
(1.6)
7028.4
(1.2)
5879.4
(0)
3088.8
(-3)
5574
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3179
1 2 3 4 range
A 3239.5
(3)
P
1952.3
(0.6)
P
2064.6
(0.8)
P
60.2
(-3)
P
3179
B 3065.4
(3)
P
2117.5
(1.1)
P
1643.9
(0.1)
P
109
(-3)
P
2956
C 2859.9
(3)
P
2328.4
(1.9)
P
2300.7
(1.8)
P
72.3
(-3)
P
2788
avr 3054.9
(3)
2132.7
(1.1)
2003.1
(0.9)
80.5
(-3)
2974

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2395
1 2 3 4 5 6 range
A 1627.5
(-0.2)
P
2707.6
(3)
P
1660
(-0.1)
P
1818.8
(0.4)
P
1621
(-0.2)
P
687.9
(-3)
P
2020
B 3076.8
(3)
P
2673.3
(1.7)
P
1621.5
(-1.6)
P
1727.9
(-1.3)
P
2331.2
(0.6)
P
1188
(-3)
P
1889
C 3082.5
(3)
P
2351
(0.8)
P
1965.7
(-0.4)
P
1486.2
(-1.8)
P
2112.6
(0.1)
P
1089.7
(-3)
P
1993
avr 2595.6
(3)
2577.3
(2.9)
1749.1
(-0.2)
1677.6
(-0.4)
2021.6
(0.9)
988.5
(-3)
1607
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180177_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15039
Sequence Type Exemplar sequence
Representative Public ID C49G7.3 NCBI
Target Description C49G7.3 /REP_DB=WormBase Gene ID /WP=CE08861 /TR=O16226 /GB=AAK18898.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071729(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_071729 NCBI Caenorhabditis elegans C49G7.3 (C49G7.3) mRNA, complete cds. 11/11 A 
SNAP00000008208 ENSEMBL cdna:SNAP chromosome:CEL140:V:4046255:4047099:1 11/11 None
GENEFINDER00000008220 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4046255:4047099:1 11/11 None
C49G7.3 ENSEMBL cdna:known chromosome:CEL140:V:4046218:4047249:1 gene:C49G7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4046254-4047099(+) 100.0 100.0
chrV:4043765-4044610(+) 93.57 93.57
Public Domain and Genome References
Gene Title
Ensembl C49G7.3
Entrez Gene 178810 Entrez gene
SwissProt O16226 EMBL-EBI
WormBase CE08861 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18898 Hypothetical protein C49G7.3 [Caenorhabditis elegans] ref|NP_504130.1| C49G7.3 [Caenorhabditis elegans] 1.0E-129
blast AAK18899 Hypothetical protein C49G7.4 [Caenorhabditis elegans] ref|NP_504129.1| C49G7.4 [Caenorhabditis elegans] 1.0E-126
blast CAE58296 Hypothetical protein CBG01404 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.5
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.3E-10
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.2E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.3E-9
Sequence
Target Sequence
>C. ELEGANS:180177_AT
cctgctcaaacgccatttctgattcatcctgtgcagctctttacccagcttctgatccag
ctaccggttacccagctccaggaaatgatgttgaaagaccatttgcttgctacacaactg
ccactccaactcctgctccagttgttccagacatgagatctgctgctttgaaaaattgtg
ccaggacttgtggattgtgctgtaagacttctgattttgattgcccaaatgttcaattcc
cacgtctgacatgttccaccatcaccaatgaacaatgccgttcttctgtctggcgtacca
tcatcgctactgattgtccatcagcctgtggattctgtaaccagggaggatgtgtcgatg
gagtcatggattgcgccaatgatctttccatctgtggcgcagtcggaatgca


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
CCTGCTCAAACGCCATTTCTGATTC 212 267 137 Antisense
TCAAACGCCATTTCTGATTCATCCT 542 629 142 Antisense
ATTGTGCTGTAAGACTTCTGATTTT 369 3 330 Antisense
AAGACTTCTGATTTTGATTGCCCAA 244 153 340 Antisense
ACATGTTCCACCATCACCAATGAAC 478 107 385 Antisense
TCACCAATGAACAATGCCGTTCTTC 514 625 398 Antisense
GCTACTGATTGTCCATCAGCCTGTG 616 301 442 Antisense
ATTGTCCATCAGCCTGTGGATTCTG 329 5 449 Antisense
GGAGTCATGGATTGCGCCAATGATC 43 517 496 Antisense
CCAATGATCTTTCCATCTGTGGCGC 323 277 512 Antisense
CCATCTGTGGCGCAGTCGGAATGCA 273 271 524 Antisense
Sequence Source Affymetrix Proprietary Database