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[180176_at]

Description K07E8.1 /REP_DB=WormBase Gene ID /WP=CE11890 /TR=O16692 /GB=AAB66148.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 10.6
(-1.8)
A 		37.9
(3)
A 		4
(-3)
A 		29.5
(1.5)
A 		34
B 7.9
(-2)
A 		15.3
(3)
A 		7.9
(-2)
A 		6.5
(-3)
A 		9
C 4.6
(-3)
A 		12.7
(-2.1)
A 		6.2
(-2.8)
A 		57.7
(3)
A 		53
avr 7.7
(-2.6) 		22
(0.8) 		6
(-3) 		31.2
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 3.5
(-3)
A 		9.6
(-2.1)
A 		7.8
(-2.4)
A 		35.7
(1.6)
A 		45.4
(3)
A 		4.8
(-2.8)
A 		42
B 33.8
(0.7)
A 		52.7
(3)
A 		3.3
(-3)
A 		25.4
(-0.3)
A 		29.5
(0.2)
A 		5.5
(-2.7)
A 		49
C 31.9
(3)
A 		2.6
(-3)
A 		8
(-1.9)
A 		10.7
(-1.3)
A 		3.6
(-2.8)
A 		14.3
(-0.6)
A 		29
avr 23.1
(2.1) 		21.6
(1.6) 		6.4
(-3) 		23.9
(2.3) 		26.2
(3) 		8.2
(-2.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.8
(-0.7)
A 		8.2
(3)
A 		1
(-3)
A 		4.3
(-0.3)
A 		7
B 2.5
(-0.3)
A 		3.8
(3)
A 		1.8
(-2)
A 		1.4
(-3)
A 		2
C 1.5
(-3)
A 		3.7
(-1.4)
A 		2.2
(-2.5)
A 		9.7
(3)
A 		8
avr 2.6
(-1.5) 		5.2
(3) 		1.7
(-3) 		5.1
(2.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.6
(-3)
A 		3.4
(-1.7)
A 		1.7
(-2.5)
A 		9
(0.8)
A 		13.7
(3)
A 		1.2
(-2.7)
A 		13
B 11.8
(1)
A 		17.5
(3)
A 		0.8
(-3)
A 		6.7
(-0.9)
A 		12
(1)
A 		2.1
(-2.5)
A 		17
C 11.8
(3)
A 		0.8
(-3)
A 		2
(-2.3)
A 		2.2
(-2.2)
A 		1.2
(-2.8)
A 		4.8
(-0.8)
A 		11
avr 8.1
(2.3) 		7.2
(1.6) 		1.5
(-3) 		6
(0.6) 		9
(3) 		2.7
(-2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4709
Sequence Type Exemplar sequence
Representative Public ID K07E8.1 NCBI
Target Description K07E8.1 /REP_DB=WormBase Gene ID /WP=CE11890 /TR=O16692 /GB=AAB66148.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061383 NCBI Caenorhabditis elegans K07E8.1 (K07E8.1) mRNA, complete cds. 11/11 None
SNAP00000018456 ENSEMBL cdna:SNAP chromosome:CEL140:II:667761:668448:1 11/11 None
GENEFINDER00000018460 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:667761:668448:1 11/11 None
K07E8.1 ENSEMBL cdna:known chromosome:CEL140:II:667761:668448:1 gene:K07E8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:667760-668448(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07E8.1
Entrez Gene 187112 Entrez gene
SwissProt O16692 EMBL-EBI
WormBase CE11890 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66148 Hypothetical protein K07E8.1 [Caenorhabditis elegans] ref|NP_493784.1| K07E8.1 [Caenorhabditis elegans] 3.0E-88
blast AAF39967 Hypothetical protein T02H6.9 [Caenorhabditis elegans] ref|NP_493787.1| T02H6.9 [Caenorhabditis elegans] 4.0E-29
blast AAK85474 Hypothetical protein F28A10.8 [Caenorhabditis elegans] ref|NP_493828.1| F28A10.8 [Caenorhabditis elegans] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 1.1E-22
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 5.8E-22
Sequence
Target Sequence 
>C. ELEGANS:180176_AT
gcgttccacaattctgacgcttctcctctggagcttggctggtgctactccacccacctt
catcaaatcaccacgaatcaccagttggggctccttcagtgcatgggaagactgcccggc
tggctattatgctcatggaatgaggatcaagtatgagagcgaaggtcaggtggataatac
tgctctcgatgcggttgagctcgcttgcaagtctccttcaattactggtagcaacaacga
cttctacataaagggcgatgaagctgattttggtacgacgagcgatcggggatcgtggac
cggagatcaattctgcccagttggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTTCCACAATTCTGACGCTTCTC 595 291 15 Antisense
TCTGGAGCTTGGCTGGTGCTACTCC 388 607 41 Antisense
CCACCTTCATCAAATCACCACGAAT 404 273 68 Antisense
ACCACGAATCACCAGTTGGGGCTCC 100 85 84 Antisense
CAGTGCATGGGAAGACTGCCCGGCT 135 207 111 Antisense
CCCGGCTGGCTATTATGCTCATGGA 391 259 129 Antisense
GGATAATACTGCTCTCGATGCGGTT 602 509 186 Antisense
GATGCGGTTGAGCTCGCTTGCAAGT 217 413 202 Antisense
GCTTGCAAGTCTCCTTCAATTACTG 236 305 217 Antisense
GATCGGGGATCGTGGACCGGAGATC 101 379 298 Antisense
GGAGATCAATTCTGCCCAGTTGGAC 640 517 316 Antisense
Sequence Source Affymetrix Proprietary Database