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[180175_at]

Description F49C12.1 /REP_DB=WormBase Gene ID /WP=CE03361 /TR=Q20579 /GB=CAA92506.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 9.1
(-2.2)
A 		1.7
(-3)
A 		19.9
(-1.1)
A 		58.9
(3)
A 		57
B 18.3
(2.7)
A 		13.8
(0.9)
A 		19.1
(3)
A 		4.3
(-3)
A 		15
C 6.9
(-2.2)
A 		30.3
(0.9)
A 		0.9
(-3)
A 		46
(3)
P 		45
avr 11.4
(-3) 		15.3
(-2.1) 		13.3
(-2.5) 		36.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 16.1
(-3)
A 		225.3
(2.5)
P 		209.4
(2)
P 		245.9
(3)
P 		123.9
(-0.2)
P 		74.5
(-1.5)
P 		230
B 11.7
(-3)
A 		268.3
(3)
P 		185.9
(1.1)
P 		214.5
(1.7)
P 		206.1
(1.5)
P 		41.4
(-2.3)
P 		257
C 3.8
(-3)
A 		272.4
(3)
P 		147.8
(0.2)
P 		208.5
(1.6)
P 		158
(0.4)
P 		61.1
(-1.7)
P 		269
avr 10.5
(-3) 		255.3
(3) 		181
(1.2) 		223
(2.2) 		162.7
(0.7) 		59
(-1.8) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.3
(-0.9)
A 		0.4
(-3)
A 		5.2
(0.5)
A 		8.6
(3)
A 		8
B 5.8
(3)
A 		3.4
(0.1)
A 		4.4
(1.3)
A 		0.9
(-3)
A 		5
C 2.3
(-1.6)
A 		8.7
(3)
A 		0.3
(-3)
A 		7.8
(2.4)
P 		8
avr 3.8
(-1.8) 		4.2
(-0.8) 		3.3
(-3) 		5.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 3
(-3)
A 		80.1
(3)
P 		45.6
(0.3)
P 		62.4
(1.6)
P 		37.4
(-0.3)
P 		18.1
(-1.8)
P 		77
B 4.1
(-3)
A 		89.3
(3)
P 		45.1
(-0.1)
P 		56.8
(0.7)
P 		83.7
(2.6)
P 		15.4
(-2.2)
P 		85
C 1.4
(-3)
A 		83.1
(3)
P 		37.6
(-0.3)
P 		41.9
(-0)
P 		51.1
(0.6)
P 		20.5
(-1.6)
P 		82
avr 2.8
(-3) 		84.2
(3) 		42.8
(-0.1) 		53.7
(0.8) 		57.4
(1) 		18
(-1.9) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8717
Sequence Type Exemplar sequence
Representative Public ID F49C12.1 NCBI
Target Description F49C12.1 /REP_DB=WormBase Gene ID /WP=CE03361 /TR=Q20579 /GB=CAA92506.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069222 NCBI Caenorhabditis elegans F49C12.1 (F49C12.1) mRNA, complete cds. 11/11 None
SNAP00000032689 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9295074:9295991:-1 11/11 None
GENEFINDER00000032710 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9294876:9296331:-1 11/11 None
F49C12.1 ENSEMBL cdna:known chromosome:CEL140:IV:9295074:9296331:-1 gene:F49C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9295079-9296337(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C12.1
Entrez Gene 186024 Entrez gene
SwissProt Q20579 EMBL-EBI
WormBase CE03361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92506 Hypothetical protein F49C12.1 [Caenorhabditis elegans] ref|NP_501623.1| F49C12.1 [Caenorhabditis elegans] 0.0
blast CAA92506 Hypothetical protein F49C12.1 [Caenorhabditis elegans] ref|NP_501623.1| F49C12.1 [Caenorhabditis elegans] 1.0E-152
blast CAA92508 Hypothetical protein F49C12.3 [Caenorhabditis elegans] ref|NP_501625.1| F49C12.3 [Caenorhabditis elegans] 1.0E-142
blast CAA92508 Hypothetical protein F49C12.3 [Caenorhabditis elegans] ref|NP_501625.1| F49C12.3 [Caenorhabditis elegans] 1.0E-122
blast CAB07605 Hypothetical protein F28G4.2 [Caenorhabditis elegans] ref|NP_507110.1| F28G4.2 [Caenorhabditis elegans] 1.0E-117
blast CAB07605 Hypothetical protein F28G4.2 [Caenorhabditis elegans] ref|NP_507110.1| F28G4.2 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501623.1 1 7-29
F49C12.1 1 7-29
GENEFINDER00000032710 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180175_AT
atccacatattccgaatactctcattgatttggcaccgttaaaagaatcattaaaatcag
tgggtgagaatcatggatatttgacttacagtctggtattgatggttcgcgttaaaatat
gcgctagtttggcacaacgaggtatcaatttttggatttcacagcaagatacaatatgga
ctgaaaattttcaaatgctaaatatagaagacatgtatccagaagctcatttaatcatgg
ataaaatcggaaacgagtcaccttattatgatagactaaggatgtgggcatgtggagcta
cattttttgtgagaggaagtcctacaacttatcagtattttaaacaagttgaatcataca
tgtttacatatcaaagcccggactcatcaattatgacatatttttgtggtcatagtggat
ataaatgcgagtttctaccacattcagttgcttcgtctagtaactattttgaaacaacac
gagaatatgttcctgctttgattcaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCACATATTCCGAATACTCTCAT 136 41 374 Antisense
TACTCTCATTGATTTGGCACCGTTA 600 645 390 Antisense
CAGTCTGGTATTGATGGTTCGCGTT 700 207 462 Antisense
ATGCGCTAGTTTGGCACAACGAGGT 78 43 492 Antisense
GTATCCAGAAGCTCATTTAATCATG 341 455 588 Antisense
ATCGGAAACGAGTCACCTTATTATG 5 19 619 Antisense
CATGTTTACATATCAAAGCCCGGAC 249 209 732 Antisense
TCAAAGCCCGGACTCATCAATTATG 474 629 744 Antisense
GGATATAAATGCGAGTTTCTACCAC 676 509 790 Antisense
TTTCTACCACATTCAGTTGCTTCGT 74 673 805 Antisense
ATATGTTCCTGCTTTGATTCAACTT 402 21 858 Antisense
Sequence Source Affymetrix Proprietary Database