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[180173_at]

Description Y62H9A.4 /REP_DB=WormBase Gene ID /WP=CE19240 /TR=Q9XWT4 /GB=CAA21561.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 16      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 6.1
(-3)
A 		16.7
(-1.6)
A 		50
(3)
A 		39.8
(1.6)
A 		44
B 7.7
(-3)
A 		10.9
(-2.5)
A 		12.2
(-2.3)
A 		46.9
(3)
A 		39
C 19.9
(-2.7)
A 		28.9
(0)
A 		18.9
(-3)
A 		38.7
(3)
A 		20
avr 11.2
(-3) 		18.8
(-1.5) 		27
(0.1) 		41.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 2.7
(-3)
A 		54.7
(-2.4)
A 		19.4
(-2.8)
A 		8.1
(-2.9)
A 		501.2
(3)
P 		173.9
(-0.9)
P 		499
B 23.6
(-2.9)
A 		20.8
(-2.9)
A 		15.5
(-3)
A 		24.5
(-2.9)
A 		512.5
(3)
P 		166
(-1.2)
P 		497
C 8.4
(-3)
A 		55
(-2.5)
A 		8.7
(-3)
A 		9.1
(-3)
A 		522
(3)
P 		182.2
(-1)
P 		514
avr 11.6
(-3) 		43.5
(-2.6) 		14.5
(-3) 		13.9
(-3) 		511.9
(3) 		174
(-1.1) 		500
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.2
(-3)
A 		3.6
(-2.2)
A 		13.1
(3)
A 		5.8
(-1)
A 		11
B 2.4
(-3)
A 		2.7
(-2.8)
A 		2.8
(-2.7)
A 		10
(3)
A 		8
C 6.6
(-2.7)
A 		8.3
(3)
A 		6.6
(-2.7)
A 		6.5
(-3)
A 		2
avr 3.7
(-3) 		4.9
(-1.1) 		7.5
(3) 		7.4
(2.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 0.5
(-3)
A 		19.4
(-2.2)
A 		4.2
(-2.9)
A 		2
(-2.9)
A 		151.2
(3)
P 		42.3
(-1.3)
P 		151
B 8.2
(-2.9)
A 		6.9
(-2.9)
A 		3.8
(-3)
A 		6.5
(-2.9)
A 		208.2
(3)
P 		61.9
(-1.3)
P 		204
C 3.1
(-3)
A 		16.8
(-2.5)
A 		2.2
(-3)
A 		1.8
(-3)
A 		168.9
(3)
P 		61
(-0.9)
P 		167
avr 3.9
(-3) 		14.4
(-2.6) 		3.4
(-3) 		3.4
(-3) 		176.1
(3) 		55.1
(-1.2) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17266
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.4 NCBI
Target Description Y62H9A.4 /REP_DB=WormBase Gene ID /WP=CE19240 /TR=Q9XWT4 /GB=CAA21561.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077584 NCBI Caenorhabditis elegans Y62H9A.4 (Y62H9A.4) mRNA, complete cds. 11/11 None
SNAP00000025456 ENSEMBL cdna:SNAP chromosome:CEL140:X:11880063:11881093:1 11/11 None
GENEFINDER00000025471 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11880063:11881093:1 11/11 None
Y62H9A.4 ENSEMBL cdna:known chromosome:CEL140:X:11880063:11881093:1 gene:Y62H9A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11880062-11881093(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.4
Entrez Gene 190461 Entrez gene
SwissProt Q9XWT4 EMBL-EBI
WormBase CE19240 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21561 Hypothetical protein Y62H9A.4 [Caenorhabditis elegans] ref|NP_509985.1| Y62H9A.4 [Caenorhabditis elegans] 1.0E-110
blast CAE69410 Hypothetical protein CBG15572 [Caenorhabditis briggsae] 2.0E-34
blast CAE69408 Hypothetical protein CBG15570 [Caenorhabditis briggsae] 5.0E-16
Sequence
Target Sequence 
>C. ELEGANS:180173_AT
cgcatgtgcggtcgtcgtatctgcgaaccaatacaatgattatggtacaatttctcacta
tcctggacatcattcaaacaatcgatactctacttctgactcatcggattcttctgagaa
tgaattaaaatcaagatcgaactcagatgagcgttacccagaatatccaggtgtatatgc
gccacaaccacctgcaacgaactacggtaccaatggaaacgagtatagaccaccaaacaa
tgtatatgaacaaaatgagtatgaacaatgcaaggaaatcaaacacttttctgttcataa
gcacagaaccgctcgtgctgacatcaaaacagtagagcgtaaggggaagacctacaacat
tatcgcctgtccaaacagtggaaaaccatatgcccttgtagcaaaaaaggaaggaacaga
cgcatctttcaagtttgagacagaattcgtcattcaagacactattctccttgcatcggg
ata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCATGTGCGGTCGTCGTATCTGCG 487 253 39 Antisense
GTACAATTTCTCACTATCCTGGACA 700 459 83 Antisense
AATCGATACTCTACTTCTGACTCAT 362 169 118 Antisense
GATGAGCGTTACCCAGAATATCCAG 386 409 184 Antisense
ATCCAGGTGTATATGCGCCACAACC 374 39 203 Antisense
ACAACCACCTGCAACGAACTACGGT 334 111 222 Antisense
AGCACAGAACCGCTCGTGCTGACAT 213 77 338 Antisense
GGAAGACCTACAACATTATCGCCTG 536 531 383 Antisense
GTGGAAAACCATATGCCCTTGTAGC 453 483 416 Antisense
GGAACAGACGCATCTTTCAAGTTTG 600 519 451 Antisense
ACACTATTCTCCTTGCATCGGGATA 123 111 497 Antisense
Sequence Source Affymetrix Proprietary Database