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[180171_s_at]

Description F39G3.3 /REP_DB=WormBase Gene ID /WP=CE28312 /TR=O16274 /GB=AAB65329.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 41      6grp_total > 22      4grp_total > 19      6grp_highest_sub > 02      6grp_high1_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 530
1 2 3 4 range
A 575.6
(-3)
P 		648.6
(-1.9)
P 		585.6
(-2.9)
P 		987.3
(3)
P 		412
B 623.6
(0.9)
P 		645.6
(1.4)
P 		457.5
(-3)
P 		715.1
(3)
P 		258
C 604
(1.3)
P 		612.2
(1.7)
P 		519.2
(-3)
P 		638.3
(3)
P 		119
avr 601.1
(-1.1) 		635.5
(-0.3) 		520.8
(-3) 		780.2
(3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 819.9
(3)
P 		818.5
(3)
P 		601
(-3)
P 		642.5
(-1.9)
P 		639.8
(-1.9)
P 		605
(-2.9)
P 		219
B 626.8
(-1.2)
P 		736.6
(2.6)
P 		746.9
(3)
P 		667.3
(0.2)
P 		576
(-3)
P 		589.3
(-2.5)
P 		171
C 635.6
(-0.1)
P 		726.3
(0.9)
P 		897.6
(3)
P 		617.7
(-0.4)
P 		606.1
(-0.5)
P 		396.3
(-3)
P 		501
avr 694.1
(1.3) 		760.5
(3) 		748.5
(2.7) 		642.5
(-0.1) 		607.3
(-1) 		530.2
(-3) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 209.6
(3)
P 		140.8
(-3)
P 		153.1
(-1.9)
P 		144.5
(-2.7)
P 		69
B 198.9
(3)
P 		159.4
(0.4)
P 		106
(-3)
P 		152.4
(-0)
P 		93
C 199.9
(3)
P 		176
(1.4)
P 		181
(1.8)
P 		107.6
(-3)
P 		92
avr 202.8
(3) 		158.7
(-0.9) 		146.7
(-2) 		134.8
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 151.1
(-2.2)
P 		291.1
(3)
P 		130.9
(-3)
P 		163
(-1.8)
P 		193.1
(-0.7)
P 		147.3
(-2.4)
P 		160
B 218.1
(0.6)
P 		245.2
(3)
P 		181.4
(-2.6)
P 		176.7
(-3)
P 		234
(2)
P 		219.8
(0.8)
P 		69
C 235.6
(3)
P 		221.6
(2.2)
P 		228.5
(2.6)
P 		124.2
(-3)
P 		196.1
(0.9)
P 		132.7
(-2.5)
P 		111
avr 201.6
(-0.1) 		252.6
(3) 		180.3
(-1.4) 		154.6
(-3) 		207.7
(0.3) 		166.6
(-2.3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180171_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14882
Sequence Type Exemplar sequence
Representative Public ID F39G3.3 NCBI
Target Description F39G3.3 /REP_DB=WormBase Gene ID /WP=CE28312 /TR=O16274 /GB=AAB65329.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071871
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029880 ENSEMBL cdna:SNAP chromosome:CEL140:V:4724591:4734244:1 11/11 None
GENEFINDER00000029888 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4733600:4734244:1 11/11 None
F39G3.3 ENSEMBL cdna:known chromosome:CEL140:V:4731597:4734521:1 gene:F39G3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4731596-4734244(+) 98.38 100.0
Public Domain and Genome References
Ensembl F39G3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65329 Hypothetical protein F39G3.3 [Caenorhabditis elegans] ref|NP_504272.2| F39G3.3 [Caenorhabditis elegans] 0.0
blast AAB65326 Hypothetical protein F39G3.4 [Caenorhabditis elegans] ref|NP_504270.1| F39G3.4 [Caenorhabditis elegans] 1.0E-127
blast CAE64180 Hypothetical protein CBG08806 [Caenorhabditis briggsae] 7.0E-89
blast CAE64180 Hypothetical protein CBG08806 [Caenorhabditis briggsae] 1.0E-69
blast CAE64180 Hypothetical protein CBG08806 [Caenorhabditis briggsae] 7.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR004877 EMBL-EBI Cytochrome b561 2.7E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000029880 5 7-29,60-82,95-117,127-149,170-192
Sequence
Target Sequence 
>C. ELEGANS:180171_S_AT
tgctccatcgcctaccaatgaagcgtcgcttaaacagctatttgccgctaccgcaggaaa
cggtgttcccgttgaaaatgatgcttcagttggaaatccgatgatgtctttcaatccatg
cacagctccaacaacgcttccgtcactgatgtcagttccggttccaccaccaccaccact
accaccacaacctgcgatgatgaacaactacatgcagccgtcgccgaatttctaccctcc
acagcaacagttcccgtcaccagttatgcaaggattcggtcagtactcgcagccaatgat
tcatcagcaaatgccgccgccgcctcaaggattccagcagcagcagccgtatcagcaaca
accaatgggttcgggatatgagtacaataattcccgtcggtatcccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCATCGCCTACCAATGAAGCG 321 581 1362 Antisense
TTAAACAGCTATTTGCCGCTACCGC 340 683 1391 Antisense
TTTCAATCCATGCACAGCTCCAACA 630 671 1470 Antisense
ACGCTTCCGTCACTGATGTCAGTTC 14 93 1495 Antisense
TACCACCACAACCTGCGATGATGAA 99 651 1541 Antisense
GTTCCCGTCACCAGTTATGCAAGGA 530 439 1611 Antisense
GCAAGGATTCGGTCAGTACTCGCAG 321 321 1629 Antisense
GTACTCGCAGCCAATGATTCATCAG 207 459 1644 Antisense
CGCCTCAAGGATTCCAGCAGCAGCA 44 257 1682 Antisense
CAGCAGCCGTATCAGCAACAACCAA 281 205 1702 Antisense
CAATAATTCCCGTCGGTATCCCACT 185 181 1746 Antisense
Sequence Source Affymetrix Proprietary Database