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[180170_at]

Description T10B5.2 /REP_DB=WormBase Gene ID /WP=CE18232 /TR=O76408 /GB=AAC19226.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 13.6
(-2.1)
A 		2.4
(-3)
A 		41.5
(0.1)
A 		77.1
(3)
A 		75
B 14.3
(3)
A 		6.6
(-0.9)
A 		2.6
(-3)
A 		4.7
(-1.9)
A 		12
C 3.5
(-3)
A 		24.9
(2.4)
A 		27.3
(3)
A 		9
(-1.6)
A 		24
avr 10.5
(-3) 		11.3
(-2.8) 		23.8
(1) 		30.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 6.5
(-2.5)
A 		4.1
(-3)
A 		25
(1.1)
A 		34.5
(3)
A 		8.5
(-2.1)
A 		5.8
(-2.7)
A 		30
B 2.5
(-3)
A 		31.3
(3)
A 		8.2
(-1.8)
A 		15.6
(-0.3)
A 		5.7
(-2.3)
A 		18.9
(0.4)
A 		29
C 7.1
(-1.7)
A 		2.7
(-3)
A 		8.9
(-1.1)
A 		5
(-2.3)
A 		22.3
(3)
A 		13.5
(0.3)
A 		20
avr 5.4
(-3) 		12.7
(0.4) 		14
(1) 		18.4
(3) 		12.2
(0.1) 		12.7
(0.4) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.9
(-0.6)
A 		0.5
(-3)
A 		10.8
(2.7)
A 		11.3
(3)
A 		11
B 4.5
(3)
A 		1.6
(-1.5)
A 		0.6
(-3)
A 		1
(-2.4)
A 		4
C 1.1
(-3)
A 		7.2
(1.4)
A 		9.5
(3)
A 		1.5
(-2.7)
A 		8
avr 3.5
(-2.4) 		3.1
(-3) 		7
(3) 		4.6
(-0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.5
(-2.8)
A 		5.5
(0.4)
A 		8.7
(3)
A 		2.6
(-1.9)
A 		1.4
(-2.8)
A 		8
B 0.9
(-3)
A 		10.4
(3)
A 		2
(-2.3)
A 		4.1
(-1)
A 		2.3
(-2.1)
A 		7.1
(0.9)
A 		10
C 2.6
(-1.3)
A 		0.8
(-3)
A 		2.3
(-1.6)
A 		1
(-2.8)
A 		7.2
(3)
A 		4.5
(0.5)
A 		6
avr 1.6
(-3) 		4.2
(2.2) 		3.3
(0.4) 		4.6
(3) 		4
(1.8) 		4.3
(2.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14875
Sequence Type Exemplar sequence
Representative Public ID T10B5.2 NCBI
Target Description T10B5.2 /REP_DB=WormBase Gene ID /WP=CE18232 /TR=O76408 /GB=AAC19226.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182437 NCBI Caenorhabditis elegans T10B5.2 (T10B5.2) mRNA, complete cds. 11/11 None
SNAP00000014347 ENSEMBL cdna:SNAP chromosome:CEL140:V:1848169:1849666:-1 9/11 None
GENEFINDER00000014362 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1847880:1851273:-1 11/11 None
T10B5.2 ENSEMBL cdna:known chromosome:CEL140:V:1847903:1850651:-1 gene:T10B5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1848835-1855450(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B5.2
Entrez Gene 353437 Entrez gene
SwissProt O76408 EMBL-EBI
WormBase CE36197 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO25993 Hypothetical protein T10B5.2 [Caenorhabditis elegans] ref|NP_872237.2| T10B5.2 [Caenorhabditis elegans] 0.0
blast AAB70675 Hypothetical protein K09C6.7 [Caenorhabditis elegans] ref|NP_503337.2| K09C6.7 [Caenorhabditis elegans] 0.0
blast AAB70675 Hypothetical protein K09C6.7 [Caenorhabditis elegans] ref|NP_503337.2| K09C6.7 [Caenorhabditis elegans] 1.0E-171
blast AAB70674 Hypothetical protein K09C6.8 [Caenorhabditis elegans] ref|NP_503338.1| K09C6.8 [Caenorhabditis elegans] 1.0E-136
blast AAB70674 Hypothetical protein K09C6.8 [Caenorhabditis elegans] ref|NP_503338.1| K09C6.8 [Caenorhabditis elegans] 1.0E-135
blast AAB70675 Hypothetical protein K09C6.7 [Caenorhabditis elegans] ref|NP_503337.2| K09C6.7 [Caenorhabditis elegans] 1.0E-106
Sequence
Target Sequence 
>C. ELEGANS:180170_AT
taacacagtaccagcagaccttctatcatttccactaccgtgcgacaatcaatttcgaca
gtgccggatccaaagaagcgcaaatcctgtgcaagctcaacaagaatcgctcacacaacg
cgatgcgtgtcatgaaatatggccagtacctaaacttgcagtacatattgacaccacagc
tgcactgggatttgggatttctcgtacaaaatacaacacttgacctctactcggctgtgc
atcttattcagcaaacattctactgcattagtgatctccacaaggtatgtcttcaccaga
gaaacaacacatcaatcgtggtgctcaataatttcttcaactccgagacgcgtcaaaaca
tccgtcgtaacatttgcacgacgaagcacaatgggctgcagcctctgtacgttcagcagg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACACAGTACCAGCAGACCTTCTA 519 639 1574 Antisense
TCATTTCCACTACCGTGCGACAATC 38 619 1599 Antisense
AGCGCAAATCCTGTGCAAGCTCAAC 446 81 1650 Antisense
GCTCAACAAGAATCGCTCACACAAC 20 303 1668 Antisense
GACACCACAGCTGCACTGGGATTTG 209 369 1743 Antisense
AAATACAACACTTGACCTCTACTCG 282 115 1782 Antisense
TCTACTCGGCTGTGCATCTTATTCA 158 615 1799 Antisense
GATCTCCACAAGGTATGTCTTCACC 48 419 1846 Antisense
TAATTTCTTCAACTCCGAGACGCGT 324 633 1902 Antisense
AAAACATCCGTCGTAACATTTGCAC 259 131 1928 Antisense
TGCAGCCTCTGTACGTTCAGCAGGC 582 577 1970 Antisense
Sequence Source Affymetrix Proprietary Database