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[180168_at] 7TM chemoreceptor, srw family

Description T05B4.6 /REP_DB=WormBase Gene ID /WP=CE13203 /TR=O16416 /GB=AAC69063.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 04      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 18.5
(-3)
A 		22.4
(-2.3)
A 		21.6
(-2.5)
A 		53.7
(3)
P 		35
B 40.6
(1.5)
A 		6.9
(-2.8)
A 		5.3
(-3)
A 		52.6
(3)
P 		47
C 23.2
(-3)
A 		34.5
(-1.8)
A 		22.7
(-3)
A 		84
(3)
M 		61
avr 27.4
(-1.6) 		21.3
(-2.4) 		16.5
(-3) 		63.4
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 48.4
(3)
A 		25.6
(0.1)
A 		22
(-0.4)
A 		5.5
(-2.5)
A 		46.5
(2.8)
A 		1.8
(-3)
A 		47
B 2.1
(-2.9)
A 		31.2
(2.5)
A 		19.4
(0.3)
A 		34
(3)
A 		1.7
(-3)
A 		7.3
(-2)
A 		32
C 3.6
(-3)
A 		42.6
(0.6)
A 		23.2
(-1.2)
A 		68.9
(3)
A 		42.8
(0.6)
A 		27.6
(-0.8)
A 		65
avr 18
(-1.5) 		33.1
(2.2) 		21.5
(-0.7) 		36.1
(3) 		30.3
(1.5) 		12.2
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.7
(0.6)
A 		4.9
(-3)
A 		5.7
(-1.4)
A 		7.9
(3)
P 		3
B 12.9
(3)
A 		1.7
(-2.7)
A 		1.2
(-3)
A 		11.2
(2.1)
P 		12
C 7.7
(-3)
A 		9.9
(-1)
A 		7.9
(-2.8)
A 		14.2
(3)
M 		7
avr 9.1
(1.1) 		5.5
(-2.4) 		4.9
(-3) 		11.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.9
(0.8)
A 		9.1
(0.8)
A 		4.8
(-1.1)
A 		1.4
(-2.6)
A 		14
(3)
A 		0.4
(-3)
A 		14
B 0.7
(-3)
A 		10.4
(3)
A 		4.7
(-0.5)
A 		9
(2.1)
A 		0.7
(-3)
A 		2.7
(-1.8)
A 		10
C 1.3
(-3)
A 		13
(2.6)
A 		5.9
(-0.8)
A 		13.9
(3)
A 		13.8
(3)
A 		9.2
(0.8)
A 		13
avr 3.6
(-3) 		10.8
(3) 		5.1
(-1.8) 		8.1
(0.8) 		9.5
(1.9) 		4.1
(-2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14844
Sequence Type Exemplar sequence
Representative Public ID T05B4.6 NCBI
Target Description T05B4.6 /REP_DB=WormBase Gene ID /WP=CE13203 /TR=O16416 /GB=AAC69063.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071743 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-133) (srw-133) mRNA, complete cds. 11/11 None
T05B4.6 ENSEMBL cdna:known chromosome:CEL140:V:4113148:4114540:-1 gene:T05B4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031060 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4113147-4114307(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-133
Ensembl T05B4.6
Entrez Gene 188102 Entrez gene
SwissProt O16416 EMBL-EBI
WormBase CE34988 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69063 Serpentine receptor, class w protein 133 [Caenorhabditis elegans] ref|NP_504144.2| Serpentine Receptor, class W family member (srw-133) [Caenorhabditis elegans] 0.0
blast AAC69064 Serpentine receptor, class w protein 134 [Caenorhabditis elegans] ref|NP_504143.1| Serpentine Receptor, class W family member (srw-134) [Caenorhabditis elegans] 1.0E-115
blast AAC69057 Serpentine receptor, class w protein 132 [Caenorhabditis elegans] ref|NP_504142.2| Serpentine Receptor, class W family member (srw-132) [Caenorhabditis elegans] 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504144.2 6 37-59,69-91,158-180,223-245,273-295,310-332
T05B4.6 6 37-59,69-91,158-180,223-245,273-295,310-332
Sequence
Target Sequence 
>C. ELEGANS:180168_AT
ggagtatccatcatctgcattattttctctattaatactgctctcgaaaatgaaattgaa
attattgatagaaaaccatcagaatgcaattcaaaaggtgttatatcatatggacatgtt
gtttccaaactattctggcaaaacgacgagtttttactgaaaatctctacattcaccact
gcaattgtttcacatattatcccgtgcattctttttccaataatcactattattcttatt
aacgaactccgaagaatcgatgtcaaacgaaaaagctccacatcttccaataaggctaaa
gattctcaaaacagaacaaaattggttttctataacacaatattatttctcatcgcagag
tttcctcttggcttcagtatggctgttacttggttttttgtcgatgttcccggattacaa
ctaatattctcatactcccaatatcttttttccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTATCCATCATCTGCATTATTT 428 517 319 Antisense
TTTTCTCTATTAATACTGCTCTCGA 315 677 341 Antisense
CATTCACCACTGCAATTGTTTCACA 536 215 488 Antisense
GTTTCACATATTATCCCGTGCATTC 571 449 505 Antisense
CCCGTGCATTCTTTTTCCAATAATC 238 261 519 Antisense
AAAGCTCCACATCTTCCAATAAGGC 502 123 590 Antisense
ATTTCTCATCGCAGAGTTTCCTCTT 79 17 663 Antisense
TTTCCTCTTGGCTTCAGTATGGCTG 392 667 679 Antisense
ATGGCTGTTACTTGGTTTTTTGTCG 426 51 697 Antisense
TTTTTGTCGATGTTCCCGGATTACA 694 673 713 Antisense
CATACTCCCAATATCTTTTTTCCGT 316 213 749 Antisense
Sequence Source Affymetrix Proprietary Database