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[180167_at]

Description F10G7.7 /REP_DB=WormBase Gene ID /WP=CE02631 /TR=Q19321 /GB=AAA81123.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 14      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 57.8
(-0.1)
A 		14.9
(-3)
A 		15.6
(-3)
A 		104.2
(3)
A 		89
B 39.2
(2)
A 		45
(3)
A 		24.1
(-0.5)
A 		8.7
(-3)
A 		36
C 54.2
(1.4)
A 		16.4
(-3)
A 		38.7
(-0.4)
A 		67.5
(3)
A 		51
avr 50.4
(1.3) 		25.4
(-3) 		26.1
(-2.9) 		60.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 56.5
(-0.3)
A 		63.9
(0.1)
A 		12.4
(-3)
A 		23.2
(-2.3)
A 		62.3
(0)
A 		111.9
(3)
A 		100
B 12
(-2.9)
A 		32.1
(-0.6)
A 		11
(-3)
A 		24.4
(-1.5)
A 		63.4
(3)
A 		43.7
(0.7)
A 		52
C 16.2
(-3)
A 		16.6
(-3)
A 		86.1
(0.3)
A 		145.1
(3)
A 		81.1
(0)
A 		74.3
(-0.3)
A 		129
avr 28.2
(-3) 		37.5
(-1.8) 		36.5
(-2) 		64.2
(1.5) 		68.9
(2) 		76.6
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21
(3)
A 		3.2
(-3)
A 		4.1
(-2.7)
A 		15.3
(1.1)
A 		18
B 12.5
(3)
A 		11.1
(2.2)
A 		5.6
(-0.9)
A 		1.9
(-3)
A 		11
C 17.9
(3)
A 		4.7
(-3)
A 		13.5
(1)
A 		11.4
(0)
A 		13
avr 17.1
(3) 		6.3
(-3) 		7.7
(-2.2) 		9.5
(-1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 10.4
(-1.1)
A 		22.7
(1.9)
A 		2.7
(-3)
A 		5.9
(-2.2)
A 		18.8
(0.9)
A 		27.3
(3)
A 		25
B 4.2
(-2.6)
A 		10.7
(-0.9)
A 		2.7
(-3)
A 		6.5
(-2)
A 		25.8
(3)
A 		16.3
(0.5)
A 		23
C 6
(-2.8)
A 		5.1
(-3)
A 		21.9
(1.2)
A 		29.2
(3)
A 		26.3
(2.3)
A 		24.9
(1.9)
A 		24
avr 6.9
(-3) 		12.8
(-0.9) 		9.1
(-2.2) 		13.9
(-0.5) 		23.6
(3) 		22.8
(2.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4918
Sequence Type Exemplar sequence
Representative Public ID F10G7.7 NCBI
Target Description F10G7.7 /REP_DB=WormBase Gene ID /WP=CE02631 /TR=Q19321 /GB=AAA81123.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062431
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000005208 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4685643:4690398:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062431 7/11 Cross Hyb Matching Probes None
F10G7.7 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4685641-4690397(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494832 F10G7.7 [Caenorhabditis elegans] gb|AAA81123.3| Hypothetical protein F10G7.7 [Caenorhabditis elegans] 0.0
blast CAE67827 Hypothetical protein CBG13410 [Caenorhabditis briggsae] 1.0E-116
blast NP_496928 Serpentine Receptor, class E (epsilon) family member (sre-47) [Caenorhabditis elegans] 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 4.9E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005208 7 173-195,207-229,263-285,306-328,338-360,397-419,424-446
Sequence
Target Sequence 
>C. ELEGANS:180167_AT
tatgtttttgcattacgccttcacactcacttttagtgtttttatattgacttgtgaacg
ggcatgtgcaacgttttttatcacagattacgagaaaaaatcgcgagcatacatatgcac
aactctattactcctgacacacacagcaacattcctattatcctgcctagccacttgtga
aattttgaactttacaacaggtgtcgctatttcgggagttttcatcgtcggcgctgtagt
gatcagtatcacacaagatgctctgaaattagtctctgagaaattgtctccgacttctcg
actcaatatggctgccgttaatcagagatgtttttatgcagcaacaaagtggcatgatgt
caagaccattgtgttcgacaacgagaatgtgactatggtcggtgcgaattttgtgcacac
ttttgaaaattcttcgtttgttagagccaatgggaacaagatggtctctaatgctgaagc
aaaggaaatcgtgctcaaactgtgtccagctgtgaagaaattgatcaccattgctagttg
cacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTTTTTGCATTACGCCTTCACA 92 655 780 Antisense
ACGCCTTCACACTCACTTTTAGTGT 441 89 794 Antisense
CGGGCATGTGCAACGTTTTTTATCA 47 245 838 Antisense
TATGCACAACTCTATTACTCCTGAC 265 657 893 Antisense
GACACACACAGCAACATTCCTATTA 106 367 915 Antisense
TTATCCTGCCTAGCCACTTGTGAAA 261 681 937 Antisense
GGTGTCGCTATTTCGGGAGTTTTCA 631 499 979 Antisense
TTCATCGTCGGCGCTGTAGTGATCA 15 689 1000 Antisense
GACTTCTCGACTCAATATGGCTGCC 141 371 1071 Antisense
GAAATCGTGCTCAAACTGTGTCCAG 1 363 1264 Antisense
TGATCACCATTGCTAGTTGCACCTC 524 565 1301 Antisense
Sequence Source Affymetrix Proprietary Database