[Home] | [Total List]

[180166_at]

Description W08G11.3 /REP_DB=WormBase Gene ID /WP=CE16560 /TR=O18179 /GB=CAB07298.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 113.4
(3)
A 		26
(-2.2)
A 		28.8
(-2)
A 		12.8
(-3)
A 		101
B 105.7
(3)
A 		69.1
(0.6)
A 		39.9
(-1.3)
A 		14.5
(-3)
A 		91
C 41.5
(0.8)
A 		53.6
(3)
A 		22.3
(-2.8)
A 		21.1
(-3)
A 		33
avr 86.9
(3) 		49.6
(-0.2) 		30.3
(-1.8) 		16.1
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 96.8
(3)
A 		82.9
(1.7)
A 		32.4
(-3)
A 		39.2
(-2.4)
A 		46.4
(-1.7)
A 		46.2
(-1.7)
A 		64
B 63.1
(3)
A 		23.9
(-1.3)
A 		17.2
(-2)
A 		33.6
(-0.2)
A 		14.9
(-2.2)
A 		7.9
(-3)
A 		55
C 129
(3)
A 		85.6
(0.7)
A 		33.4
(-2)
A 		62.1
(-0.5)
A 		13.4
(-3)
A 		13.7
(-3)
A 		116
avr 96.3
(3) 		64.1
(0.4) 		27.7
(-2.6) 		45
(-1.2) 		24.9
(-2.8) 		22.6
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 41.3
(3)
A 		5.6
(-2.4)
A 		7.5
(-2.1)
A 		1.9
(-3)
A 		39
B 33.7
(3)
A 		17.1
(-0.3)
A 		9.2
(-1.8)
A 		3.1
(-3)
A 		31
C 13.7
(2.1)
A 		15.4
(3)
A 		7.8
(-0.9)
A 		3.6
(-3)
A 		12
avr 29.6
(3) 		12.7
(-0.8) 		8.2
(-1.8) 		2.9
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 17.8
(-0.1)
A 		29.5
(3)
A 		7
(-3)
A 		9.9
(-2.2)
A 		14
(-1.1)
A 		11.2
(-1.9)
A 		23
B 21.9
(3)
A 		8
(-1.4)
A 		4.2
(-2.6)
A 		8.9
(-1.1)
A 		6.1
(-2)
A 		2.9
(-3)
A 		19
C 47.8
(3)
A 		26.1
(0)
A 		8.5
(-2.4)
A 		12.5
(-1.9)
A 		4.3
(-3)
A 		4.6
(-3)
A 		44
avr 29.2
(3) 		21.2
(0.9) 		6.6
(-2.9) 		10.4
(-1.9) 		8.1
(-2.5) 		6.2
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13362
Sequence Type Exemplar sequence
Representative Public ID W08G11.3 NCBI
Target Description W08G11.3 /REP_DB=WormBase Gene ID /WP=CE16560 /TR=O18179 /GB=CAB07298.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074733(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074733 NCBI Caenorhabditis elegans W08G11.3 (W08G11.3) mRNA, complete cds. 11/11 None
SNAP00000011328 ENSEMBL cdna:SNAP chromosome:CEL140:V:16372991:16374335:1 11/11 None
GENEFINDER00000011332 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16370005:16374335:1 11/11 None
W08G11.3.1 ENSEMBL cdna:known chromosome:CEL140:V:16370264:16374680:1 gene:W08G11.3 11/11 None
W08G11.3.2 ENSEMBL cdna:known chromosome:CEL140:V:16370274:16374335:1 gene:W08G11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16371263-16374335(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08G11.3
Entrez Gene 189304 Entrez gene
SwissProt O18179 EMBL-EBI
WormBase CE16560 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07298 Hypothetical protein W08G11.3 [Caenorhabditis elegans] ref|NP_507134.1| W08G11.3 [Caenorhabditis elegans] 0.0
blast CAB07298 Hypothetical protein W08G11.3 [Caenorhabditis elegans] ref|NP_507134.1| W08G11.3 [Caenorhabditis elegans] 1.0E-137
blast CAE74928 Hypothetical protein CBG22811 [Caenorhabditis briggsae] 1.0E-107
blast CAE74928 Hypothetical protein CBG22811 [Caenorhabditis briggsae] 7.0E-47
Sequence
Target Sequence 
>C. ELEGANS:180166_AT
gacgtacgagaagcagctgtccagaatggaagaagaaattgagcatttgaaagctgaaaa
gttgaagcaggagcagcaacaaataatgatggaggaagaggaggatgcagtggttcagaa
tctcgaggaacttccagcctatctgaagactccaatgaggccggatccaacgaagatgga
aggtcttaaaaagactattcaagtgaagatcaggcttgatgaagagcccgaacgcccggc
tcggccggctagtggaccgcccgtagattcacctgtgacgtggcatcagagaaagccgtt
cgaacggctcccagcgatggttgtgccgctttttgggacaactgaagcaccatcaacagg
acccggaccatccatttcatccgaagatctcatcacttcctcgacaatcgaatcaacgtc
cgatgaaattagcattgccgcctgcaatcagttctctgaggaggatctgctgctcgccga
gccaactgatatgatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTACGAGAAGCAGCTGTCCAGA 537 377 807 Antisense
TCGAGGAACTTCCAGCCTATCTGAA 303 603 929 Antisense
ACTCCAATGAGGCCGGATCCAACGA 395 81 955 Antisense
GATTCACCTGTGACGTGGCATCAGA 71 431 1072 Antisense
GAAAGCCGTTCGAACGGCTCCCAGC 441 355 1097 Antisense
ATGGTTGTGCCGCTTTTTGGGACAA 419 51 1123 Antisense
TCCGAAGATCTCATCACTTCCTCGA 660 595 1186 Antisense
ATGAAATTAGCATTGCCGCCTGCAA 85 45 1229 Antisense
CCGCCTGCAATCAGTTCTCTGAGGA 253 263 1244 Antisense
TCTCTGAGGAGGATCTGCTGCTCGC 55 613 1259 Antisense
CTCGCCGAGCCAACTGATATGATAT 456 233 1279 Antisense
Sequence Source Affymetrix Proprietary Database