[Home] | [Total List]

[180164_at]

Description C32B5.3 /REP_DB=WormBase Gene ID /WP=CE08511 /TR=P91117 /GB=AAB37959.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 15.3
(-3)
A 		68.3
(3)
A 		36.3
(-0.6)
A 		47.7
(0.7)
A 		53
B 33.5
(1.1)
A 		13
(-2.2)
A 		45.4
(3)
A 		8.2
(-3)
A 		37
C 43.8
(0.9)
A 		27.5
(-3)
A 		52.8
(3)
A 		33.6
(-1.6)
A 		25
avr 30.9
(-2.6) 		36.3
(-0.4) 		44.8
(3) 		29.8
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 9.2
(-3)
A 		49.9
(0.6)
A 		77
(3)
A 		34.7
(-0.7)
A 		21.8
(-1.9)
A 		16.2
(-2.4)
A 		68
B 31.7
(1.1)
A 		7
(-2.6)
A 		43.8
(3)
A 		42.3
(2.8)
A 		8.1
(-2.5)
A 		4.7
(-3)
A 		39
C 7.5
(-2.7)
A 		8.8
(-2.5)
A 		15.7
(-1.4)
A 		11.2
(-2.1)
A 		5.5
(-3)
A 		43.4
(3)
A 		38
avr 16.1
(-2.2) 		21.9
(-1.2) 		45.5
(3) 		29.4
(0.1) 		11.8
(-3) 		21.4
(-1.3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.6
(-3)
A 		14.8
(3)
A 		9.5
(-0.5)
A 		7
(-2.1)
A 		9
B 10.7
(3)
A 		3.2
(-2)
A 		10.5
(2.9)
A 		1.7
(-3)
A 		9
C 14.5
(1.2)
A 		7.9
(-2)
A 		18.4
(3)
A 		5.7
(-3)
A 		13
avr 10.3
(1.1) 		8.6
(-0.2) 		12.8
(3) 		4.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.7
(-3)
A 		17.7
(3)
A 		16.8
(2.7)
A 		8.8
(-0.3)
A 		6.6
(-1.2)
A 		4
(-2.1)
A 		16
B 11
(2.9)
A 		2.3
(-2.6)
A 		10.6
(2.6)
A 		11.2
(3)
A 		3.3
(-2)
A 		1.7
(-3)
A 		10
C 2.8
(-2.5)
A 		2.7
(-2.6)
A 		4
(-2)
A 		2.2
(-2.8)
A 		1.8
(-3)
A 		14.5
(3)
A 		13
avr 5.2
(-1.8) 		7.6
(0.4) 		10.5
(3) 		7.4
(0.2) 		3.9
(-3) 		6.7
(-0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4677
Sequence Type Exemplar sequence
Representative Public ID C32B5.3 NCBI
Target Description C32B5.3 /REP_DB=WormBase Gene ID /WP=CE08511 /TR=P91117 /GB=AAB37959.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061472 NCBI Caenorhabditis elegans C32B5.3 (C32B5.3) mRNA, complete cds. 11/11 None
SNAP00000042181 ENSEMBL cdna:SNAP chromosome:CEL140:II:981351:982439:1 11/11 None
GENEFINDER00000042185 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:981288:984570:1 11/11 None
C32B5.3 ENSEMBL cdna:known chromosome:CEL140:II:981682:982605:1 gene:C32B5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:981680-982604(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32B5.3
Entrez Gene 183107 Entrez gene
SwissProt P91117 EMBL-EBI
WormBase CE08511 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493874 Serpentine Receptor, class H family member (srh-274) [Caenorhabditis elegans] gb|AAB37958.1| Serpentine receptor, class h protein 274 [Caenorhabditis elegans] 1.0E-166
blast NP_493873 C32B5.3 [Caenorhabditis elegans] gb|AAB37959.1| Hypothetical protein C32B5.3 [Caenorhabditis elegans] 1.0E-111
blast NP_493873 C32B5.3 [Caenorhabditis elegans] gb|AAB37959.1| Hypothetical protein C32B5.3 [Caenorhabditis elegans] 1.0E-109
blast AAB52307 Serpentine receptor, class h protein 275 [Caenorhabditis elegans] ref|NP_504876.1| Serpentine Receptor, class H family member (srh-275) [Caenorhabditis elegans] 1.0E-100
blast NP_493873 C32B5.3 [Caenorhabditis elegans] gb|AAB37959.1| Hypothetical protein C32B5.3 [Caenorhabditis elegans] 2.0E-93
blast NP_493865 C32B5.16 [Caenorhabditis elegans] gb|AAB37971.1| Hypothetical protein C32B5.16 [Caenorhabditis elegans] 2.0E-48
blast AAC68939 Hypothetical protein C44C8.1 [Caenorhabditis elegans] ref|NP_500010.1| C44C8.1 [Caenorhabditis elegans] 6.0E-42
blast NP_493865 C32B5.16 [Caenorhabditis elegans] gb|AAB37971.1| Hypothetical protein C32B5.16 [Caenorhabditis elegans] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042185 7 304-326,339-361,381-403,423-445,479-501,529-551,566-585
Sequence
Target Sequence 
>C. ELEGANS:180164_AT
gaatcaagattccagcgaactcgaggaaaatccgaatgaagtaaggcttaacgtgcgagt
tgctccaattagacgtcgagtcaatgtcagacgttttaatcgcggtcctactaggaatag
tctgataagactgaagatgggaagaagagttgaagttctgagctatcaacgaaaaatgca
tgaagctttgaagtatatgcttgggaagctattcggaggacgtaatgtgaaagtgaacca
gctcgccattggttgtaaaagcatacttcggattccgaccaccgtcaagtttaacgttaa
aattttggaggttctggataccaacatctataacaacttgggaaccgtttgctcgataat
tgaagattccagtctgccatttaacacgataaaattccgacactccgtgaacgccgatgg
aata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAAGATTCCAGCGAACTCGAG 492 327 129 Antisense
GGCTTAACGTGCGAGTTGCTCCAAT 232 537 173 Antisense
GTTGCTCCAATTAGACGTCGAGTCA 398 439 187 Antisense
CAGACGTTTTAATCGCGGTCCTACT 274 191 216 Antisense
TGTGAAAGTGAACCAGCTCGCCATT 243 555 354 Antisense
AAGCATACTTCGGATTCCGACCACC 459 137 387 Antisense
GGAGGTTCTGGATACCAACATCTAT 686 515 435 Antisense
ACAACTTGGGAACCGTTTGCTCGAT 232 113 461 Antisense
ATTCCAGTCTGCCATTTAACACGAT 598 7 494 Antisense
AACACGATAAAATTCCGACACTCCG 679 133 511 Antisense
ACACTCCGTGAACGCCGATGGAATA 318 109 528 Antisense
Sequence Source Affymetrix Proprietary Database