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[180163_at] 7TM chemoreceptor, srw family

Description K12D9.4 /REP_DB=WormBase Gene ID /WP=CE12186 /TR=P91379 /GB=AAG24160.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 11      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 16.9
(-2)
A 		2.7
(-3)
A 		32.7
(-0.9)
A 		88.3
(3)
P 		86
B 50.6
(3)
A 		5.6
(-2.5)
A 		1.8
(-3)
A 		47.4
(2.6)
A 		49
C 21.4
(-1.9)
A 		66
(1)
A 		4.7
(-3)
A 		95.7
(3)
P 		91
avr 29.6
(-1.5) 		24.8
(-1.9) 		13.1
(-3) 		77.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 6.3
(-2.4)
A 		2.9
(-3)
A 		8.8
(-1.9)
A 		17.1
(-0.4)
A 		35.6
(3)
A 		13.8
(-1)
A 		33
B 12.7
(-0.9)
A 		29.9
(2.5)
A 		32.2
(3)
A 		4
(-2.6)
A 		2
(-3)
A 		4.4
(-2.5)
A 		30
C 21.5
(0.2)
A 		5.8
(-3)
A 		35.7
(3)
A 		10.8
(-2)
A 		28.8
(1.6)
A 		8.3
(-2.5)
A 		30
avr 13.5
(-1.3) 		12.9
(-1.5) 		25.6
(3) 		10.6
(-2.4) 		22.1
(1.8) 		8.8
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 6.2
(-0.3)
A 		0.6
(-3)
A 		8.5
(0.9)
A 		12.9
(3)
P 		12
B 16.1
(3)
A 		1.4
(-2.6)
A 		0.4
(-3)
A 		10.1
(0.7)
A 		16
C 7.1
(-1.1)
A 		19
(3)
A 		1.6
(-3)
A 		16.1
(2)
P 		17
avr 9.8
(1) 		7
(-0.8) 		3.5
(-3) 		13
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		1
(-3)
A 		1.9
(-2.4)
A 		4.3
(-1)
A 		10.7
(3)
A 		3.4
(-1.5)
A 		10
B 4.4
(-0.6)
A 		9.9
(3)
A 		7.8
(1.6)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		1.6
(-2.5)
A 		9
C 8
(2)
A 		1.8
(-3)
A 		9.1
(2.8)
A 		2.2
(-2.7)
A 		9.3
(3)
A 		2.8
(-2.2)
A 		8
avr 4.5
(-0.3) 		4.2
(-0.7) 		6.3
(2.2) 		2.5
(-3) 		6.9
(3) 		2.6
(-2.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180163_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15529
Sequence Type Exemplar sequence
Representative Public ID K12D9.4 NCBI
Target Description K12D9.4 /REP_DB=WormBase Gene ID /WP=CE12186 /TR=P91379 /GB=AAG24160.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071414 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-115) (srw-115) mRNA, complete cds. 11/11 None
GENEFINDER00000022487 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2990090:2993743:-1 10/11 None
K12D9.4 ENSEMBL cdna:known chromosome:CEL140:V:2992449:2993743:-1 gene:K12D9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022476 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2992444-2993743(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-115
Ensembl K12D9.4
Entrez Gene 187325 Entrez gene
SwissProt P91379 EMBL-EBI
WormBase CE34344 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24160 Serpentine receptor, class w protein 115 [Caenorhabditis elegans] ref|NP_503815.2| Serpentine Receptor, class W family member (srw-115) [Caenorhabditis elegans] 0.0
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 1.0E-144
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 1.0E-138
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-137
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-134
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503815.2 7 38-60,67-89,127-144,164-186,221-243,270-292,307-329
K12D9.4 7 38-60,67-89,127-144,164-186,221-243,270-292,307-329
GENEFINDER00000022487 11 38-60,67-89,127-144,164-186,221-243,270-292,307-329,432-449,464-486,530-552,581-603
Sequence
Target Sequence 
>C. ELEGANS:180163_AT
ctcatcgttttcattgcttttattcgaacactgattgttcggaatccaatgagcacaaag
tttgaggcactgtgccagccgaaagcatcagcaatcataattgctggaatttgtgcgaca
agcttcccagtttcagtgctcaagtttctcgaatatcaatttattgagatcgagggactc
gaatcttgtgctaaaggaccgcatcacattttcgctgtgtccgatttatttactgcaaac
gacggttttttggcaaaatatttttatttattcaattcatttgtgtcagacatagttccg
tgtatactgctaccgattgtaaccttattactggttatggatttatggagagccgctaaa
aaaagaacgaatctcatttctgtgagtaagaaccataattctcgaactggattagtgttc
tgtgtaactataatgtttttcattgttgagtttccttatggattgagcatggggtttgtg
tggatgtataatgatgtgttgggcttacagcacatgatgtctcgatttgcattcatgttt
gcaataaaaacacaattgcgagcaggactcaagtcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATCGTTTTCATTGCTTTTATTC 380 229 406 Antisense
CACTGTGCCAGCCGAAAGCATCAGC 211 199 473 Antisense
GAATTTGTGCGACAAGCTTCCCAGT 467 325 512 Antisense
TTCCCAGTTTCAGTGCTCAAGTTTC 638 693 529 Antisense
GAGGGACTCGAATCTTGTGCTAAAG 24 403 577 Antisense
GACCGCATCACATTTTCGCTGTGTC 212 383 602 Antisense
CGCTGTGTCCGATTTATTTACTGCA 220 255 618 Antisense
TAGTTCCGTGTATACTGCTACCGAT 255 649 698 Antisense
TGGGCTTACAGCACATGATGTCTCG 594 553 905 Antisense
GATGTCTCGATTTGCATTCATGTTT 588 409 921 Antisense
AATTGCGAGCAGGACTCAAGTCACT 438 177 959 Antisense
Sequence Source Affymetrix Proprietary Database