[Home] | [Total List]

[180160_at]

Description T12B5.5 /REP_DB=WormBase Gene ID /WP=CE20063 /TR=Q9TZ28 /GB=AAC68931.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 25.5
(-3)
A 		34
(-1.3)
A 		55.3
(3)
A 		27
(-2.7)
A 		30
B 21.3
(-3)
A 		61.8
(1.7)
A 		73.2
(3)
P 		29.5
(-2.1)
A 		52
C 20.4
(-3)
A 		81.7
(3)
A 		38.1
(-1.3)
A 		56.3
(0.5)
A 		61
avr 22.4
(-3) 		59.2
(3) 		55.5
(2.4) 		37.6
(-0.5) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 63.2
(3)
A 		36.1
(0.3)
A 		3.7
(-3)
A 		11.5
(-2.2)
A 		32.3
(-0.1)
A 		25.9
(-0.8)
A 		60
B 11.1
(-3)
A 		32.8
(0.2)
A 		52
(3)
A 		43.4
(1.7)
A 		41
(1.4)
A 		12.4
(-2.8)
A 		41
C 31.1
(0.7)
A 		31.6
(0.8)
A 		15.4
(-2.3)
A 		32.2
(0.9)
A 		42.9
(3)
A 		11.6
(-3)
A 		31
avr 35.1
(2) 		33.5
(1.6) 		23.7
(-1.1) 		29
(0.4) 		38.7
(3) 		16.6
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 9.3
(0)
A 		7.4
(-1.1)
A 		14.5
(3)
A 		4
(-3)
A 		11
B 6.8
(-2.7)
A 		15.3
(2)
A 		17
(3)
P 		6.3
(-3)
A 		11
C 6.8
(-3)
A 		23.5
(3)
A 		13.3
(-0.7)
A 		9.5
(-2)
A 		17
avr 7.6
(-2.3) 		15.4
(3) 		14.9
(2.7) 		6.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.6
(2.4)
A 		12.8
(3)
A 		0.8
(-3)
A 		2.9
(-2)
A 		9.7
(1.5)
A 		6.3
(-0.3)
A 		12
B 3.9
(-3)
A 		10.9
(0.3)
A 		12.6
(1.1)
A 		11.5
(0.6)
A 		16.6
(3)
A 		4.6
(-2.7)
A 		13
C 11.5
(1.6)
A 		9.6
(0.4)
A 		3.9
(-3)
A 		6.5
(-1.4)
A 		13.9
(3)
A 		3.9
(-3)
A 		10
avr 9
(-0.1) 		11.1
(1.4) 		5.8
(-2.4) 		7
(-1.5) 		13.4
(3) 		4.9
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8132
Sequence Type Exemplar sequence
Representative Public ID T12B5.5 NCBI
Target Description T12B5.5 /REP_DB=WormBase Gene ID /WP=CE20063 /TR=Q9TZ28 /GB=AAC68931.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064897
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007698 ENSEMBL cdna:SNAP chromosome:CEL140:III:938368:939424:1 11/11 None
GENEFINDER00000007713 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:938368:939424:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064897 7/11 Cross Hyb Matching Probes None
T12B5.5 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:938334-939424(+) 87.27 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68931 Hypothetical protein T12B5.5 [Caenorhabditis elegans] ref|NP_497298.2| T12B5.5 [Caenorhabditis elegans] 3.0E-94
blast AAC68938 Hypothetical protein T12B5.11 [Caenorhabditis elegans] ref|NP_497302.1| T12B5.11 [Caenorhabditis elegans] 5.0E-40
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 3.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.2E-59
Sequence
Target Sequence 
>C. ELEGANS:180160_AT
gaaaatcgcttttcaggacctggaaaccgtactaaaacatgcttcacggctccgcttatg
cctagttggagctcgccgcatggtcacctcttttataaacgctttgaaagccaaaaagtg
cgttcacgtgaagaaattagagcttgtgtattgctcagccacagagattctcggaatttt
gccgtggcttgatgttcaagttctcgagcagattcagttgtcggatactgaaataagcaa
tcaacttgagaggtttgctcatctggagcaatggaaaaatgcaaaaatattcaaactatc
cgagtctctgttttcctgcaaacgaattgaatatctgtttcacttcgaacagttttccat
caaagtttccgattttccaatagaaattgcaattaaaattcgagatgatctcttgacaag
aagtaaattccagaaatgcaagatcacatttaaaggatcaaagtcagatccggttgagct
tgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATCGCTTTTCAGGACCTGGAA 358 353 342 Antisense
TACTAAAACATGCTTCACGGCTCCG 511 645 371 Antisense
CGGCTCCGCTTATGCCTAGTTGGAG 448 241 388 Antisense
GCATGGTCACCTCTTTTATAAACGC 381 309 419 Antisense
GAGCTTGTGTATTGCTCAGCCACAG 151 389 481 Antisense
TTGCTCAGCCACAGAGATTCTCGGA 609 701 492 Antisense
GATTCTCGGAATTTTGCCGTGGCTT 449 431 507 Antisense
TTGATGTTCAAGTTCTCGAGCAGAT 290 705 530 Antisense
AAACTATCCGAGTCTCTGTTTTCCT 609 127 634 Antisense
GTTTCACTTCGAACAGTTTTCCATC 672 449 678 Antisense
AAGTCAGATCCGGTTGAGCTTGCAA 577 155 802 Antisense
Sequence Source Affymetrix Proprietary Database