[Home] | [Total List]

[180159_at]

Description C32B5.9 /REP_DB=WormBase Gene ID /WP=CE08517 /TR=P91107 /GB=AAB37964.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_high_8_8 > 21      6grp_highest_nonorm > 90      6grp_total > 63      4grp_total > 10      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 32.4
(-3)
P 		72.8
(1.3)
P 		32
(-3)
A 		89.4
(3)
P 		57
B 49.1
(-2.9)
P 		47.8
(-3)
P 		50.4
(-2.8)
P 		114.7
(3)
P 		67
C 52.1
(-2.5)
P 		46.2
(-2.7)
A 		38.9
(-3)
P 		191.3
(3)
P 		152
avr 44.5
(-2.7) 		55.6
(-2) 		40.4
(-3) 		131.8
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 83.8
(-3)
P 		87
(-2.9)
P 		221.7
(3)
P 		215.2
(2.7)
P 		107.3
(-2)
P 		87.4
(-2.8)
P 		138
B 67.4
(-3)
P 		95.7
(-2)
P 		241.9
(3)
P 		197
(1.5)
P 		137.6
(-0.6)
P 		96
(-2)
P 		175
C 60.2
(-3)
P 		90.1
(-1.4)
P 		154
(1.9)
P 		173.9
(3)
P 		82.4
(-1.8)
P 		134.3
(0.9)
P 		114
avr 70.5
(-3) 		90.9
(-2.1) 		205.9
(3) 		195.4
(2.5) 		109.1
(-1.3) 		105.9
(-1.4) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 11.8
(-0.2)
P 		15.8
(3)
P 		8.4
(-3)
A 		13.1
(0.8)
P 		7
B 15.7
(-1.1)
P 		11.8
(-3)
P 		11.7
(-3)
P 		24.4
(3)
P 		13
C 17.3
(-1.7)
P 		13.3
(-3)
A 		13.5
(-2.9)
P 		32.2
(3)
P 		19
avr 14.9
(-1.2) 		13.6
(-1.8) 		11.2
(-3) 		23.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 15.5
(-3)
P 		30.9
(-0.6)
P 		48.3
(2)
P 		54.6
(3)
P 		32.4
(-0.4)
P 		21.3
(-2.1)
P 		39
B 23.5
(-3)
P 		31.9
(-1.6)
P 		58.7
(3)
P 		52.2
(1.9)
P 		55.9
(2.5)
P 		35.8
(-0.9)
P 		35
C 22.3
(-3)
P 		27.5
(-1.6)
P 		39.2
(1.5)
P 		35
(0.4)
P 		26.7
(-1.8)
P 		44.9
(3)
P 		23
avr 20.4
(-3) 		30.1
(-0.9) 		48.7
(3) 		47.3
(2.7) 		38.3
(0.8) 		34
(-0.1) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4366
Sequence Type Exemplar sequence
Representative Public ID C32B5.9 NCBI
Target Description C32B5.9 /REP_DB=WormBase Gene ID /WP=CE08517 /TR=P91107 /GB=AAB37964.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061462 NCBI Caenorhabditis elegans C32B5.9 (C32B5.9) mRNA, complete cds. 11/11 None
SNAP00000042172 ENSEMBL cdna:SNAP chromosome:CEL140:II:954054:956343:1 11/11 None
GENEFINDER00000042191 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:954495:957967:1 11/11 None
C32B5.9 ENSEMBL cdna:known chromosome:CEL140:II:954054:956343:1 gene:C32B5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067611 1/11 Cross Hyb Matching Probes None
F58H7.7 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:954052-956342(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32B5.9
Entrez Gene 183113 Entrez gene
SwissProt P91107 EMBL-EBI
WormBase CE08517 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493863 C32B5.9 [Caenorhabditis elegans] gb|AAB37964.1| Hypothetical protein C32B5.9 [Caenorhabditis elegans] 0.0
blast NP_493863 C32B5.9 [Caenorhabditis elegans] gb|AAB37964.1| Hypothetical protein C32B5.9 [Caenorhabditis elegans] 1.0E-166
blast AAC02596 Hypothetical protein F58H7.7 [Caenorhabditis elegans] ref|NP_500012.2| F58H7.7 [Caenorhabditis elegans] 1.0E-154
blast NP_493864 C32B5.8 [Caenorhabditis elegans] gb|AAB37957.1| Hypothetical protein C32B5.8 [Caenorhabditis elegans] 1.0E-153
blast AAC68939 Hypothetical protein C44C8.1 [Caenorhabditis elegans] ref|NP_500010.1| C44C8.1 [Caenorhabditis elegans] 6.0E-99
blast AAC68940 Hypothetical protein C44C8.3 [Caenorhabditis elegans] gb|AAC68941.1| Hypothetical protein C44C8.2 [Caenorhabditis elegans] ref|NP_500008.1| C44C8.3 [Caenorhabditis elegans] ref|NP_500009.1| C44C8.2 [Caenorhabditis elegans] 2.0E-75
Sequence
Target Sequence 
>C. ELEGANS:180159_AT
aaatattcggggggagaggtctcattattgttggcacactttccatcggatgtcgaggga
tactgcggataccgtcaagattgaagtttgagatccgtgacttggaattaggaagtgagg
ataatattaagctctttgaggagatcaagccattgctgcatcttacttcttttcctctaa
actatttttctctcttcaacagctataacttgaggtacgaagatccagttgttcaatcca
ctggtgttcttatcttcaaaaatatttcttcctttgataataatgagctcgaaaatttaa
atgagctccgtcacaagcgagctcacttatcgttcgaccgttatttcgagttgcaaataa
tcgtaggactcattggcaactggattaaatttggacgagatattggtacttattattcag
ttgaattgcaagcaaaaaacaaaggatcggaggttttggagattattaaaagaaatcacg
aagagaggattattgaccgacctaacgaggatccgaacatcgtcctacttcgtatgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATATTCGGGGGGAGAGGTCTCAT 259 113 806 Antisense
GAGGTCTCATTATTGTTGGCACACT 348 403 821 Antisense
AAGCCATTGCTGCATCTTACTTCTT 468 149 952 Antisense
CTATTTTTCTCTCTTCAACAGCTAT 77 225 987 Antisense
GAGGTACGAAGATCCAGTTGTTCAA 669 399 1017 Antisense
CACTGGTGTTCTTATCTTCAAAAAT 201 199 1044 Antisense
TCGTTCGACCGTTATTTCGAGTTGC 225 287 1135 Antisense
ATCGTAGGACTCATTGGCAACTGGA 474 29 1165 Antisense
GAGGATTATTGACCGACCTAACGAG 304 401 1290 Antisense
ACGAGGATCCGAACATCGTCCTACT 500 93 1310 Antisense
GAACATCGTCCTACTTCGTATGAAC 538 349 1320 Antisense
Sequence Source Affymetrix Proprietary Database