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[180158_at]

Description T01A4.2 /REP_DB=WormBase Gene ID /WP=CE21134 /TR=Q9TXR2 /GB=AAC78238.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 54      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 166.2
(3)
A 		107.1
(-1.4)
A 		90
(-2.7)
A 		86
(-3)
A 		80
B 198.6
(3)
M 		82.3
(-1.2)
A 		97.4
(-0.6)
A 		31.1
(-3)
A 		168
C 154.8
(3)
M 		99.5
(-1.3)
A 		78.4
(-3)
A 		81.5
(-2.8)
A 		76
avr 173.2
(3) 		96.3
(-1.3) 		88.6
(-1.7) 		66.2
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 120
(3)
A 		74.3
(0.1)
A 		24.9
(-3)
A 		67.2
(-0.3)
A 		40.2
(-2)
A 		65
(-0.5)
A 		95
B 122.2
(3)
A 		61.1
(-0.5)
A 		18.3
(-3)
A 		51.9
(-1.1)
A 		51.7
(-1.1)
A 		86.1
(0.9)
A 		104
C 88.3
(0.5)
A 		99.1
(2.3)
A 		81.5
(-0.6)
A 		82.8
(-0.4)
A 		66.8
(-3)
A 		103.2
(3)
A 		36
avr 110.2
(3) 		78.2
(0.2) 		41.6
(-3) 		67.3
(-0.8) 		52.9
(-2) 		84.8
(0.8) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 60.5
(3)
A 		23.3
(-1.7)
A 		23.5
(-1.6)
A 		12.6
(-3)
A 		48
B 63.3
(3)
M 		20.3
(-1.6)
A 		22.6
(-1.3)
A 		6.6
(-3)
A 		57
C 51.2
(3)
M 		28.6
(-0.6)
A 		27.3
(-0.8)
A 		13.7
(-3)
A 		38
avr 58.3
(3) 		24.1
(-1.3) 		24.5
(-1.3) 		11
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 22.1
(1.8)
A 		26.4
(3)
A 		5.4
(-3)
A 		17
(0.3)
A 		12.1
(-1.1)
A 		15.8
(-0)
A 		21
B 42.5
(3)
A 		20.3
(-0.5)
A 		4.4
(-3)
A 		13.7
(-1.5)
A 		21
(-0.4)
A 		32.1
(1.4)
A 		38
C 32.7
(2.4)
A 		30.3
(1.6)
A 		20.8
(-1.6)
A 		16.6
(-3)
A 		21.6
(-1.3)
A 		34.5
(3)
A 		18
avr 32.4
(3) 		25.7
(1.2) 		10.2
(-3) 		15.8
(-1.5) 		18.2
(-0.8) 		27.5
(1.7) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.617
Sequence Type Exemplar sequence
Representative Public ID T01A4.2 NCBI
Target Description T01A4.2 /REP_DB=WormBase Gene ID /WP=CE21134 /TR=Q9TXR2 /GB=AAC78238.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058977 NCBI Caenorhabditis elegans T01A4.2 (T01A4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000011639 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4481228:4492979:1 11/11 None
SNAP00000011632 ENSEMBL cdna:SNAP chromosome:CEL140:I:4481239:4484425:1 11/11 None
T01A4.2 ENSEMBL cdna:known chromosome:CEL140:I:4481239:4484425:1 gene:T01A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4481238-4484425(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01A4.2
Entrez Gene 187922 Entrez gene
SwissProt Q9TXR2 EMBL-EBI
WormBase CE21134 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78238 Hypothetical protein T01A4.2 [Caenorhabditis elegans] ref|NP_491378.1| T01A4.2 [Caenorhabditis elegans] 1.0E-151
blast AAO61423 Hypothetical protein T01A4.1c [Caenorhabditis elegans] ref|NP_001021600.1| T01A4.1c [Caenorhabditis elegans] 1.0E-138
blast AAL77521 guanylyl cyclase [Caenorhabditis elegans] 1.0E-138
blast AAC78238 Hypothetical protein T01A4.2 [Caenorhabditis elegans] ref|NP_491378.1| T01A4.2 [Caenorhabditis elegans] 1.0E-129
blast CAE69074 Hypothetical protein CBG15092 [Caenorhabditis briggsae] 1.0E-120
blast CAE69073 Hypothetical protein CBG15091 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 1.7E-15
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 1.7E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011639 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:180158_AT
aaatccatttttgttctcatctcacaaagtaaaaccgctcgctgatttggctctggagag
agtttatcgagaaggaatcctacccaacaactctgtaaatctaatttatcgagactcaaa
actatcggatgctattggtccaaacgtggcagttgagcaacttcttcgaaaacaaattga
ttgtataattggttatgcgtatggatatgcacttgcaccagttgccagaatgtctccata
ttggaaaaatggaattccgataatcacaccaattggcttgacaatgagtttagatgataa
acgagaatatcagttaatgacaagaattaatagtccgtataaagtagtctccagcgctgt
atcaacactattcaacacatataaatggaaacgccacatttttatgtttcaccacgcaaa
agcgccgtctgtggccgttggagaatgcttccttctgatggcaagtctacagcatccact
tcgaaaggtcatggaaatgcaacacaacttcttcacgttcaacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCCATTTTTGTTCTCATCTCAC 92 119 192 Antisense
CGCTCGCTGATTTGGCTCTGGAGAG 459 255 227 Antisense
AATCCTACCCAACAACTCTGTAAAT 26 145 267 Antisense
ATATGCACTTGCACCAGTTGCCAGA 493 21 396 Antisense
GTCCGTATAAAGTAGTCTCCAGCGC 267 477 524 Antisense
TCTCCAGCGCTGTATCAACACTATT 85 611 539 Antisense
CCACGCAAAAGCGCCGTCTGTGGCC 147 275 603 Antisense
GTCTGTGGCCGTTGGAGAATGCTTC 545 471 618 Antisense
GAATGCTTCCTTCTGATGGCAAGTC 604 329 634 Antisense
GTCTACAGCATCCACTTCGAAAGGT 581 469 656 Antisense
ACACAACTTCTTCACGTTCAACGAA 467 109 693 Antisense
Sequence Source Affymetrix Proprietary Database